PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016510084.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 559aa    MW: 62908.6 Da    PI: 8.2919
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016510084.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.69.2e-203681986
        trihelix 19 erlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                      +r+++lk+plWeevs+k+++ g++rs k+Ckek+en+ k+++++k+g+ ++   + +t+++fdql 
  XP_016510084.1  3 VVFRDSSLKGPLWEEVSRKLADLGYHRSGKKCKEKFENVYKYHRRTKDGRASK--ADGKTYRFFDQLA 68
                    568999*********************************************96..66678******96 PP
2trihelix104.48.3e-33364449187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k+e+ aLi++r++++ +++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea
  XP_016510084.1 364 RWPKEEIEALIRLRTSLDLKYQDNGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 449
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.86E-14149No hitNo description
PfamPF138371.5E-12669No hitNo description
PROSITE profilePS500905.2271542IPR017877Myb-like domain
SMARTSM007172.6E-5361423IPR001005SANT/Myb domain
CDDcd122032.86E-29363428No hitNo description
PfamPF138379.5E-23363450No hitNo description
Gene3DG3DSA:1.10.10.607.5E-5363420IPR009057Homeodomain-like
PROSITE profilePS500907.689363421IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MDVVFRDSSL KGPLWEEVSR KLADLGYHRS GKKCKEKFEN VYKYHRRTKD GRASKADGKT  60
YRFFDQLAAF ENTPSHTCLP PPPPPLAATP LTMAMPMPVR RPNSSANPPI PMSQNTFTVS  120
QNNAAAPTVN HPLNASSLPP TQPIITTVNQ INRPQGNTSS LLSNSTSSSS TSSDEDIQKR  180
HGKKRKWKDF FERLTKDVIE KQEELQNNFL ETLEKRERER MVREETWRVQ EMTRMNREHD  240
LLVQERSMAA AKDATIIAFL QKITEQKNTP IPNITNASLA QIQFQLSEKS PSVPPHSQPQ  300
KQTQQPPAPP TTIPAPATTP APATAVSLPM AIHAQVQTQA PSLPFEAPKT DNGGENLSPA  360
SSSRWPKEEI EALIRLRTSL DLKYQDNGPK GPLWEEISAG MRKLGYNRNA KRCKEKWENI  420
NKYFKKVKES NKKRPEDSKT CPYFHQLEAL YKEKAKNEVV PNTGTGFGLK PENNNPMVPI  480
MAEPEQQWPF PSNQPQQQQQ QQQQGIMSNI IQDHDNESDS MEEDDYDDDE DEGNAYEIVT  540
NKQPSSMAAA TATAATTAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177185QKRHGKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016510084.10.0PREDICTED: trihelix transcription factor GT-2-like isoform X2
TrEMBLA0A1S4DA480.0A0A1S4DA48_TOBAC; trihelix transcription factor GT-2-like isoform X2
STRINGXP_009787560.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-59Trihelix family protein