PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016510019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 24459.7 Da PI: 7.4165 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47 | 6.2e-15 | 81 | 128 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +GVr +k +g++ AeIrd + + kr++lg+f taeeA + + ++++eg XP_016510019.1 81 SGVRKRK-WGKYCAEIRDpF-----NkKRIWLGTFNTAEEASQVHQSKKLEFEG 128 8***999.**********55.....34**************9998888887776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.015 | 79 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-7 | 80 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-7 | 80 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-14 | 81 | 130 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.5E-10 | 82 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-18 | 82 | 129 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.48E-18 | 82 | 128 | No hit | No description |
PRINTS | PR00367 | 7.0E-7 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MKSQPKIAEE NNGKQRREDE PIKIQRKIII KISDPDATES SSSEEEEQGK RQSRKQQPKL 60 TVHEIFQDKV KTTTFSSKLP SGVRKRKWGK YCAEIRDPFN KKRIWLGTFN TAEEASQVHQ 120 SKKLEFEGKL KMAKIAKTKK AISEKSELES QTSDSSNGVE ELLMGQWIQI SDDKEVYFSL 180 KLGVPIVDNY GFLLGEFSEL DDLSISVCDV ENDL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764166.1 | 1e-155 | PREDICTED: ethylene-responsive transcription factor ERF118-like | ||||
Refseq | XP_016510019.1 | 1e-155 | PREDICTED: ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | A0A1S4D9Y5 | 1e-154 | A0A1S4D9Y5_TOBAC; ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | A0A1U7VGZ0 | 1e-154 | A0A1U7VGZ0_NICSY; ethylene-responsive transcription factor ERF118-like | ||||
STRING | XP_009764166.1 | 1e-154 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5075 | 15 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28370.1 | 1e-17 | ERF domain protein 11 |