PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016509844.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 616aa MW: 71785 Da PI: 6.7135

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016509844.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35	4.6e-11	138	215	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+e+A+ GFsv+k++s+k+ ++ t++C + r+ + ++ + + ka+l ++++g w+v+k++++HnH+l XP_016509844.1 138 FYKEHARLKGFSVVKRNSNKK-GGDTARYITYCCDRARIRKIKVTT----------KSNNYKARLAAILDDSGCWRVSKVVHDHNHDLL 215 9*************99998.55558899*****9998777..........4455689999999***************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-8	138	215	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-30	336	427	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence Send to blast
MDSNQENLAV QQNMNRNEHN TNTTTISINQ DNRFDRVRDE LYRSLGMASD DSLLNEYEWV 60 DVDSHGSFNN VVHLDDDDDE ADGEYHGEAS DDEEQVLGNE LELCDVDREM ENEFTKEDVV 120 VGPISGMRFR DKDTLFAFYK EHARLKGFSV VKRNSNKKGG DTARYITYCC DRARIRKIKV 180 TTKSNNYKAR LAAILDDSGC WRVSKVVHDH NHDLLSSVSR PMAGHRSVCD SLKRDLVAHD 240 QSGIRPSKNR LAEVQRGGPQ NLGCTPKDCR NSILKSRNFE MQEGDAQSLL NFFREIQVKD 300 REFFYSIDVD NIGRLRNVVW VHSHCKAAYE QFYDAICFDT TYLVNRYNMP CATFVGINHH 360 RQSILLGCAL MSHEDIDSYK LVFRTWLDAM GNVHPDAITT DQCQSIKIAI AEMMPNTIHR 420 YCIWHIFSKL PLYVSGVRPS KIARGEFKSM VLDSIIVDVF ERKWTEYIVR YNLHTRNWFN 480 KLYSKKEKWV PVYLDVHFWA GMLSTQRSEG LHAFFDGYIT RQSTFMMFVH QYKLAIRAKN 540 EKELEAEYRS KGFQIVCESM FKWEEQAIQC YTRTVYEFFK TELRKLYHCE VSSPDDHQVV 600 PGVEKFIVSD YSVIKK

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence Send to blast

MDSNQENLAV QQNMNRNEHN TNTTTISINQ DNRFDRVRDE LYRSLGMASD DSLLNEYEWV  60
DVDSHGSFNN VVHLDDDDDE ADGEYHGEAS DDEEQVLGNE LELCDVDREM ENEFTKEDVV  120
VGPISGMRFR DKDTLFAFYK EHARLKGFSV VKRNSNKKGG DTARYITYCC DRARIRKIKV  180
TTKSNNYKAR LAAILDDSGC WRVSKVVHDH NHDLLSSVSR PMAGHRSVCD SLKRDLVAHD  240
QSGIRPSKNR LAEVQRGGPQ NLGCTPKDCR NSILKSRNFE MQEGDAQSLL NFFREIQVKD  300
REFFYSIDVD NIGRLRNVVW VHSHCKAAYE QFYDAICFDT TYLVNRYNMP CATFVGINHH  360
RQSILLGCAL MSHEDIDSYK LVFRTWLDAM GNVHPDAITT DQCQSIKIAI AEMMPNTIHR  420
YCIWHIFSKL PLYVSGVRPS KIARGEFKSM VLDSIIVDVF ERKWTEYIVR YNLHTRNWFN  480
KLYSKKEKWV PVYLDVHFWA GMLSTQRSEG LHAFFDGYIT RQSTFMMFVH QYKLAIRAKN  540
EKELEAEYRS KGFQIVCESM FKWEEQAIQC YTRTVYEFFK TELRKLYHCE VSSPDDHQVV  600
PGVEKFIVSD YSVIKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016509844.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1S4D9E9	0.0	A0A1S4D9E9_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_009781959.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1301	9	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-81	FAR1 family protein