PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016509793.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 265aa MW: 30478.5 Da PI: 8.2117 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.6e-19 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd llv+++ q+G g+W+ a++ g++Rt+k+c++rw++yl XP_016509793.1 24 RGPWTVEEDSLLVNYISQHGEGRWNMLAHRAGLKRTGKSCRLRWLNYL 71 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ +lG++ W++Ia++++ gRt++++k++w++ XP_016509793.1 77 RGNLTPQEQLLILELHFKLGNR-WSKIAQYLP-GRTDNEIKNYWRT 120 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.717 | 19 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.24E-31 | 21 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-16 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 24 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 25 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.84E-12 | 26 | 71 | No hit | No description |
PROSITE profile | PS51294 | 23.988 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-14 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 77 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-23 | 79 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.80E-11 | 81 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
METDMSFLSK SSSSSSDEEI GLRRGPWTVE EDSLLVNYIS QHGEGRWNML AHRAGLKRTG 60 KSCRLRWLNY LKPDVKRGNL TPQEQLLILE LHFKLGNRWS KIAQYLPGRT DNEIKNYWRT 120 RVQKQAKHLK IDSNSAAFQH MIRCIWIPRL LQKIQEITQT PQVLSLERNS ISSSRCCSSR 180 SPSSESMSIY KSPNIISECP KIPPREMGDS VVNVHFPFDD NSYDMDTFSP ATGNFLTNYD 240 QMVGGENNMM NGDILADSFW SMDQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 22 | 126 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ538949 | 1e-108 | AJ538949.1 Nicotiana tabacum cDNA-AFLP-fragment BT3-M23-017. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016509793.1 | 0.0 | PREDICTED: transcription factor MYB108-like isoform X3 | ||||
Swissprot | Q10MB4 | 5e-74 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
Swissprot | Q9C9G7 | 2e-74 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A1S4D8U1 | 0.0 | A0A1S4D8U1_TOBAC; transcription factor MYB108-like isoform X3 | ||||
STRING | XP_009804370.1 | 1e-170 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 4e-75 | myb domain protein 62 |