PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016509600.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 288aa    MW: 33184.5 Da    PI: 6.711
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016509600.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-153077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT +Ed +l++++ +lG g+W++ a+  g++Rt+k+c++rw +yl
   XP_016509600.1 30 KGGWTLDEDSKLIHYISLLGQGRWDSLAHFAGLKRTGKSCRLRWMNYL 77
                     688*******************************************97 PP
2Myb_DNA-binding44.14.8e-1483126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l++ ++ ++G++ W++Ia+ ++ gRt++++k++w++
   XP_016509600.1  83 RGKLTPQEQLLILLLHFRFGNR-WAKIAEQLP-GRTDNEVKNYWRT 126
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.8512581IPR017930Myb domain
SuperFamilySSF466891.5E-2727124IPR009057Homeodomain-like
SMARTSM007172.2E-132979IPR001005SANT/Myb domain
PfamPF002492.0E-143077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-193284IPR009057Homeodomain-like
CDDcd001672.63E-103377No hitNo description
PROSITE profilePS5129415.58882132IPR017930Myb domain
SMARTSM007179.8E-1382130IPR001005SANT/Myb domain
PfamPF002492.3E-1383126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2185130IPR009057Homeodomain-like
CDDcd001672.23E-987126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MIKTPPCLLF HVKKDLEDFI SCKEKVEMRK GGWTLDEDSK LIHYISLLGQ GRWDSLAHFA  60
GLKRTGKSCR LRWMNYLRPN LRRGKLTPQE QLLILLLHFR FGNRWAKIAE QLPGRTDNEV  120
KNYWRTKVQK HAKQLHCDVN SLQFRDFLYY QWLPRLTEQI RSTSSPQEQL MSSSSSTSHN  180
NSTEVILENF TFLQAGINES TNITCPINQS TPNVAQVTSL IDDNIWNLSS GNWTSSGFED  240
EFYDLSSTDM AIYSNSQDQC HSWASAGSEV LLPDETLGLS DVDLWLFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-252713024126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016509600.10.0PREDICTED: transcription factor MYB24-like
SwissprotQ10MB41e-67MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A1S4D8310.0A0A1S4D831_TOBAC; transcription factor MYB24-like
STRINGXP_009631883.11e-171(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.17e-65myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]