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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_016509393.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | Nin-like | ||||||||
| Protein Properties | Length: 302aa MW: 35305.9 Da PI: 6.5371 | ||||||||
| Description | Nin-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | RWP-RK | 83.9 | 1.5e-26 | 175 | 224 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
+++ ledl+kyF+lpi +A+k+L+v+lTvLK++CR++GI+RWPhRkiksl
XP_016509393.1 175 ARLALEDLAKYFDLPIVEASKSLKVGLTVLKKKCREFGIPRWPHRKIKSL 224
6899********************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51519 | 19.497 | 159 | 244 | IPR003035 | RWP-RK domain |
| Pfam | PF02042 | 3.1E-22 | 177 | 224 | IPR003035 | RWP-RK domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0071816 | Biological Process | tail-anchored membrane protein insertion into ER membrane | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 302 aa Download sequence Send to blast |
MFRSVHVYRT EGGKEEMEER EYLFHETSNF EETGFAPVIT LHKFDVSAQF VGIENGVWKC 60 MFVYDSGRHQ STSTNASPEW LSFAENPKME FIPTLANDLR AISELALNVE FRELSGRSST 120 EESGGNNIKS NQLDVKRRVP FLDLNSLPYS DSDIEENDQN ASENKKRRAA TKDIARLALE 180 DLAKYFDLPI VEASKSLKVG LTVLKKKCRE FGIPRWPHRK IKSLDSLIHD LQEEMQRQQE 240 EDELAAIAVE ERKRRIEYER ESIEKKPFMD IQKETKKFRQ DIFKRRYKAR VLENQCRTLP 300 LF |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016509390.1 | 0.0 | PREDICTED: protein RKD5-like isoform X1 | ||||
| Refseq | XP_016509391.1 | 0.0 | PREDICTED: protein RKD5-like isoform X1 | ||||
| Refseq | XP_016509392.1 | 0.0 | PREDICTED: protein RKD5-like isoform X1 | ||||
| Refseq | XP_018625314.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
| Refseq | XP_018625315.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
| Refseq | XP_018625316.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
| Refseq | XP_018625317.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
| Refseq | XP_018625318.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
| TrEMBL | A0A1S4D7H3 | 0.0 | A0A1S4D7H3_TOBAC; protein RKD5-like isoform X1 | ||||
| STRING | XP_009597270.1 | 0.0 | (Nicotiana tomentosiformis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G35590.1 | 2e-59 | RWP-RK domain-containing protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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