PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016509391.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Nin-like | ||||||||
Protein Properties | Length: 324aa MW: 37801.9 Da PI: 6.8047 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.7 | 1.7e-26 | 197 | 246 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++ ledl+kyF+lpi +A+k+L+v+lTvLK++CR++GI+RWPhRkiksl XP_016509391.1 197 ARLALEDLAKYFDLPIVEASKSLKVGLTVLKKKCREFGIPRWPHRKIKSL 246 6899********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 19.497 | 181 | 266 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.4E-22 | 199 | 246 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0071816 | Biological Process | tail-anchored membrane protein insertion into ER membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MASSQNRTLT ALVIFQNFLY PVMFRSVHVY RTEGGKEEME EREYLFHETS NFEETGFAPV 60 ITLHKFDVSA QFVGIENGVW KCMFVYDSGR HQSTSTNASP EWLSFAENPK MEFIPTLAND 120 LRAISELALN VEFRELSGRS STEESGGNNI KSNQLDVKRR VPFLDLNSLP YSDSDIEEND 180 QNASENKKRR AATKDIARLA LEDLAKYFDL PIVEASKSLK VGLTVLKKKC REFGIPRWPH 240 RKIKSLDSLI HDLQEEMQRQ QEEDELAAIA VEERKRRIEY ERESIEKKPF MDIQKETKKF 300 RQDIFKRRYK ARVLENQCRT LPLF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016509390.1 | 0.0 | PREDICTED: protein RKD5-like isoform X1 | ||||
Refseq | XP_016509391.1 | 0.0 | PREDICTED: protein RKD5-like isoform X1 | ||||
Refseq | XP_016509392.1 | 0.0 | PREDICTED: protein RKD5-like isoform X1 | ||||
Refseq | XP_018625314.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
Refseq | XP_018625315.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
Refseq | XP_018625316.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
Refseq | XP_018625317.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
Refseq | XP_018625318.1 | 0.0 | PREDICTED: protein RKD5 isoform X1 | ||||
TrEMBL | A0A1S4D7H3 | 0.0 | A0A1S4D7H3_TOBAC; protein RKD5-like isoform X1 | ||||
STRING | XP_009597270.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 1e-63 | RWP-RK domain-containing protein |