PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016509006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 703aa    MW: 79343.5 Da    PI: 5.5235
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016509006.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.82.6e-1083256992374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cAea +s + +   ++L+++++++sp gdp+ Rla +f++AL+ar a+   + ++++++ ++s  + ++ l+a++++  ++P+ ++s++
  XP_016509006.1 325 TSLLTRCAEAAASYNSKTFVEVLSKIRQHSSPFGDPTARLAYCFANALEARFAG--GGGVDTITTPKKSILSAADFLKAYQVYITACPFKRMSNI 417
                     689**************************************************9..55556666666666789********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN+ I + ++++ +vHiiDf+i +G+QWp++++ ++ Rp+gpp+l+iTg++ p++g   +e++eetg+rL+++++++gvpfe+++ +ak+++d+
  XP_016509006.1 418 FANKSIAKLTSEAPKVHIIDFGILYGFQWPCIIHGISLRPGGPPKLKITGIDFPQPGfrPAERVEETGRRLENYCKRFGVPFEYKA-IAKKWDDI 511
                     ********************************************************9*****************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     +le+L+++++E+++Vn+ ++l++++de+v ++    +r++vL+l+k+++P+ +v+   +a +n++ F +rf eal ++s+ fd++ea++ re+e 
  XP_016509006.1 512 KLEHLNIEQDETVVVNCLYRLKNVPDETVLTNGnnnPRNAVLRLIKEINPHWFVHGIVNAMYNASFFTTRFREALFHFSSQFDMFEATMTREDEG 606
                     ***************************9977655669********************************************************** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     r+  E+e++gr+i+nv+aceg+er+er e++++W+ r + aGF+++pl+++++k++k+ +r+++ + + v+e+s+++++gWk+r ++++S+W+
  XP_016509006.1 607 RMIFEQEVFGRDIMNVIACEGTERVERPESYKQWSVRNQIAGFRQLPLNQDIVKEVKAKVRMFYHRDFLVDEDSNWMLQGWKGRIMYALSVWQ 699
                     ****************************************************************999*************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.464298679IPR005202Transcription factor GRAS
PfamPF035149.2E-106325699IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MNTNTYFPSV DHRSTDGLEC CHRFAMASTN LGNEFSSTDI HDVVFFSSSN GTSSNNDEVV  60
VEGGGGGGCD QTVVESDYFD GVFKYIQQML LEEEDDLESR PCMFQDCIAL QAAEKSFYDA  120
LTDNNNNDDD PTIVEHCSST DFPVNHGFIS TTHCLQDDNF NHFLDQSDLI SDFDCSNTGI  180
RGNTPLNNNC QVVAAANDDH RNIYYGVNST NTNNQGGTSK SEGKKKHNRE DCGESSNGPN  240
SKQFASNGAE ETEEKTHEEY YDKAVLCPDM NPAFYVEDSC DDGSRSSSEN AAWDKQKSRH  300
IKQSKRGRPR GTKKGVKTNE VVDLTSLLTR CAEAAASYNS KTFVEVLSKI RQHSSPFGDP  360
TARLAYCFAN ALEARFAGGG GVDTITTPKK SILSAADFLK AYQVYITACP FKRMSNIFAN  420
KSIAKLTSEA PKVHIIDFGI LYGFQWPCII HGISLRPGGP PKLKITGIDF PQPGFRPAER  480
VEETGRRLEN YCKRFGVPFE YKAIAKKWDD IKLEHLNIEQ DETVVVNCLY RLKNVPDETV  540
LTNGNNNPRN AVLRLIKEIN PHWFVHGIVN AMYNASFFTT RFREALFHFS SQFDMFEATM  600
TREDEGRMIF EQEVFGRDIM NVIACEGTER VERPESYKQW SVRNQIAGFR QLPLNQDIVK  660
EVKAKVRMFY HRDFLVDEDS NWMLQGWKGR IMYALSVWQP IHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-483246995375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016509006.10.0PREDICTED: scarecrow-like protein 30
TrEMBLA0A1S4D6M80.0A0A1S4D6M8_TOBAC; scarecrow-like protein 30
STRINGXP_009798121.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-154GRAS family protein