PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016508916.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 198aa    MW: 22854.5 Da    PI: 7.5681
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016508916.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68.1e-15855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEde lv  +++lG ++W++ a+  g++R++k+c++rw++yl
   XP_016508916.1  8 RGQWLEEEDESLVMIIAMLGERRWDALAKASGLRRSGKSCRLRWLNYL 55
                     899*******************************************97 PP

2Myb_DNA-binding46.86.6e-1565106548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      T+ E+ l++++ kq+G++ W++Ia+ ++ gRt++++k++w ++l
   XP_016508916.1  65 TAGEEHLIIQLQKQFGNK-WSKIAEQLP-GRTDNEIKNYWKSHL 106
                      788***************.*********.***********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.47355IPR017930Myb domain
SuperFamilySSF466893.15E-266102IPR009057Homeodomain-like
SMARTSM007174.0E-11757IPR001005SANT/Myb domain
PfamPF002491.8E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-19962IPR009057Homeodomain-like
CDDcd001672.94E-81155No hitNo description
PROSITE profilePS5129425.32656110IPR017930Myb domain
SMARTSM007178.1E-1360108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2363109IPR009057Homeodomain-like
CDDcd001671.16E-965106No hitNo description
PfamPF002493.3E-1365106IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MHQDELRRGQ WLEEEDESLV MIIAMLGERR WDALAKASGL RRSGKSCRLR WLNYLRPNLK  60
HGHITAGEEH LIIQLQKQFG NKWSKIAEQL PGRTDNEIKN YWKSHLRKKA LTYKQESFGS  120
NTSNSEQQSS TLKSDTVPSS HSDDSFSGKG DCSSADSLAY SSNDTTLLDW IPSWSYEQSR  180
MEHHMYFCSS NLCFCYPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-2551101105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-24511055159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-24511055159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754492e-46HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508913.11e-147PREDICTED: myb-related protein MYBAS1-like isoform X1
RefseqXP_016508914.11e-147PREDICTED: myb-related protein MYBAS1-like isoform X1
RefseqXP_016508915.11e-147PREDICTED: myb-related protein MYBAS1-like isoform X1
RefseqXP_016508916.11e-147PREDICTED: myb-related protein MYBAS1-like isoform X1
SwissprotQ9SCP14e-48MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A1S4D6611e-146A0A1S4D661_TOBAC; myb-related protein MYBAS1-like isoform X1
STRINGXP_009592986.11e-135(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.14e-50myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]