PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016508631.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 26313.4 Da PI: 5.2888 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.1e-19 | 24 | 74 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +ft+eq++ Le++F+++ ++ +++ eLA+ lgL+ rqV +WFqNrRa++k XP_016508631.1 24 RFTDEQVKLLESMFKQEIKLEPRKKLELARDLGLQPRQVAIWFQNRRARWK 74 7*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.7 | 7.3e-39 | 23 | 112 | 4 | 93 |
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +r+++eqvklLE++F++e kLep++K elar+Lglqprqva+WFqnrRAR+k+kq+E++y+ Lk+++d+l+ + ++L++e+e+L ++l+e XP_016508631.1 23 KRFTDEQVKLLESMFKQEIKLEPRKKLELARDLGLQPRQVAIWFQNRRARWKSKQMEHEYRLLKAEFDKLNMQFQSLKQEKESLLKQLEE 112 8************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.68E-19 | 11 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.589 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-17 | 18 | 80 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.0E-17 | 24 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.68E-14 | 24 | 77 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-20 | 24 | 83 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.7E-6 | 47 | 56 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 51 | 74 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.7E-6 | 56 | 72 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.6E-12 | 76 | 117 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEAEDTLTHG NTEPSNKKSK DGKRFTDEQV KLLESMFKQE IKLEPRKKLE LARDLGLQPR 60 QVAIWFQNRR ARWKSKQMEH EYRLLKAEFD KLNMQFQSLK QEKESLLKQL EELNDQLENN 120 HAGCSRGQDS LDSKIYTCSE NGGTDLELKD NISGCLNASV EGKKVNEVEN DREGRLIEHF 180 RWKEEPEFWN MEELGDSSLG SPGHWCAVGL GRTFDLSCGN SKWWEF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 76 | RRARWKSKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803292.1 | 1e-166 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Refseq | XP_016508631.1 | 1e-166 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A1S4D5H4 | 1e-164 | A0A1S4D5H4_TOBAC; homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A1U7YGQ4 | 1e-164 | A0A1U7YGQ4_NICSY; homeobox-leucine zipper protein ATHB-12-like | ||||
STRING | XP_009803292.1 | 1e-165 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 5e-34 | homeobox 7 |