PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016508571.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 288aa    MW: 30989.1 Da    PI: 6.8021
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016508571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.8e-16121170155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + ++G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  XP_016508571.1 121 PVFRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 170
                     5799**6..678*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-9121170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-25122178IPR001471AP2/ERF domain
SMARTSM003803.0E-27122186IPR001471AP2/ERF domain
PROSITE profilePS5103219.902122178IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-17122179IPR016177DNA-binding domain
CDDcd000182.09E-15123178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKNRHTYIYI PINKHTHIVD IYMADHPADD STKTSQKNQP PQPSESSQTP FFHIPPRLLP  60
PPPVEETNIS PRPLISKILE ITKSPPKTVQ LPNIIPTVTT TMSSTSSGGG SPSRPTCGKH  120
PVFRGIRSRS GKWVSEIREP RKTTRIWLGT YPTPEMAAAA YDVAALALKG GDAVINFPGN  180
LTSYPSLPPS PSPADIRKAA ASAAALMKPQ TGEGTMLTQP GNVDDQTSGS GQMISTGGAE  240
YIDEEALFDM PNLLVDMAEA MMVSPPRMNS PPSSDSPGNS DAESLWSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508571.10.0PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ904e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1S4D5B30.0A0A1S4D5B3_TOBAC; ethylene-responsive transcription factor ERF027-like
STRINGXP_009591034.11e-140(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.19e-41ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]