PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016508470.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 415aa    MW: 46855.1 Da    PI: 4.5806
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016508470.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
   XP_016508470.1 14 RGRWTAEEDEILTKYIQTNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding53.74.8e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T eE+++++++++ lG++ W++Ia +++ gRt++++k++w+++l
   XP_016508470.1  67 RGNITSEEEDIIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.897961IPR017930Myb domain
SuperFamilySSF466891.42E-2811108IPR009057Homeodomain-like
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002492.1E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-211568IPR009057Homeodomain-like
CDDcd001671.01E-81661No hitNo description
PROSITE profilePS5129425.40162116IPR017930Myb domain
SMARTSM007176.3E-1666114IPR001005SANT/Myb domain
PfamPF002495.8E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2569116IPR009057Homeodomain-like
CDDcd001671.63E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDEILTKYIQ TNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLRRGNI TSEEEDIIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKVESLR  120
IPSDEKLPQA VVDLANKGTL NPIKCRVGKT SRPTVKKNRT FKKSSSSLPE PKQPKESSEP  180
LNSTVPMPST PNMEKEALSS TINAMDSMQE EVANVAAAPN PWPGSREAQS SLSSDSGMEW  240
LDDIMPMVMD DQNMDPNEFI LTCLDNGQGE SPEKVSNDAE NNCGTTNRVN EHNIKDHDNK  300
MVPSEDTQLE SSPESEAVSI NILKDVQENS NETRLLIEDG TVEWDWQEIA EDRREVWSWE  360
ETGQENMSIN HSWPLWDNTD TELLQNCTNE ITVEMDSVLH SENQNHSSLV AWLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508470.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1S4D4W80.0A0A1S4D4W8_TOBAC; myb-related protein Myb4-like
STRINGXP_009787226.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-76myb domain protein 12