PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016508346.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Whirly
Protein Properties Length: 239aa    MW: 26601.5 Da    PI: 10.6556
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016508346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly201.21.3e-62632011139
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     sv+k+kaal+ ++++ptf++ldsg +kl+r+G ++l++ ++++erkydWek+q falsatev++l+++++++sceffhdp++ +sn+G+vrk+l+
  XP_016508346.1  63 SVFKGKAALSAEPRLPTFSKLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISIGTRDSCEFFHDPSMLSSNAGQVRKSLS 157
                     79********************************************************************************************* PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      +P +dGsG+fv+lsv n+ +k+n++f+vPv+ aefav+r++++
  XP_016508346.1 158 FKPNADGSGYFVSLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFS 201
                     *****************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.6E-7551220IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544477.85E-6556237IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.5E-5964198IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAILKLAGFL RPRNQLLHKR LPGEGVRDSI WQHAINTLAG FSTVRQNIVA DGKLTGRVFA  60
PYSVFKGKAA LSAEPRLPTF SKLDSGGVKL NRRGVIMLTF WPSVGERKYD WEKRQLFALS  120
ATEVGSLISI GTRDSCEFFH DPSMLSSNAG QVRKSLSFKP NADGSGYFVS LSVVNNNLKT  180
NDRFTVPVTT AEFAVMRTAF SFALPHIMGW DRFTNQPSES ISQSPSKVVP QLMETEWDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-114522195172StWhy2
3n1i_A1e-114522195172protein StWhy2
3n1j_A1e-114522195172Protein StWhy2
3n1k_A1e-114522195172protein StWhy2
3n1l_A1e-114522195172protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2345040.0HM234504.1 Solanum tuberosum Why2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508346.11e-178PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial-like isoform X4
RefseqXP_018625610.11e-178PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial isoform X4
SwissprotD9J0341e-159WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A1S4D4P21e-176A0A1S4D4P2_TOBAC; single-stranded DNA-bindig protein WHY2, mitochondrial-like isoform X4
STRINGXP_009598355.11e-173(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.16e-93WHIRLY 2