PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016508166.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 528aa MW: 60819.5 Da PI: 7.1968 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.9 | 1.6e-29 | 106 | 191 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++r+ k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea XP_016508166.1 106 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRTGKKCREKFENLYKYYKKTKEGRAGR--QDGKHYRFFRQLEA 191 8*************************************999*****************************98..55667*******85 PP | |||||||
2 | trihelix | 57.5 | 3.6e-18 | 394 | 468 | 2 | 75 |
trihelix 2 WtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 W+++e+ Li++r++me+r+++ ++ lWee+++km+ g+ +s+ +Ck+kw+++n + k+++ +k+++ +s XP_016508166.1 394 WPESEITRLIQLRTSMESRFQQmgFTGDEVLWEEIAAKMSCLGYDKSSLMCKNKWDSINSYLMKCNKKRKENS-TS 468 *********************94346899**************************************999862.22 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.1 | 103 | 166 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.073 | 105 | 164 | IPR017877 | Myb-like domain |
CDD | cd12203 | 2.51E-19 | 106 | 171 | No hit | No description |
Pfam | PF13837 | 1.4E-20 | 106 | 192 | No hit | No description |
PROSITE profile | PS50090 | 6.829 | 386 | 452 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.35 | 390 | 454 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 6.0E-13 | 392 | 470 | No hit | No description |
CDD | cd12203 | 5.37E-19 | 394 | 459 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046621 | Biological Process | negative regulation of organ growth | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048498 | Biological Process | establishment of petal orientation | ||||
GO:0090428 | Biological Process | perianth development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 528 aa Download sequence Send to blast |
MEDQYGMADL RQYMNGRQLF ASIQPPELLP ATTHQHRNLI GPGHHQYEMV MGLAQVPAHG 60 LPPHHQQHHE FLPDSSTTAT AATTSSAGFS GLEMEAAGGG GDGSGRWPRQ ETLTLLEIRS 120 RLDSKFKEAN QKGPLWDEVS RIMSEEHGYQ RTGKKCREKF ENLYKYYKKT KEGRAGRQDG 180 KHYRFFRQLE ALYGETSNIN ATSVSETHHV GSHFPYNPIN NNNNNHDPQN FHQLAPKLSD 240 SLSLSNSSDF NTTSSDGSDL NENSKDQKGK KGRGKRSLKA KIKDFIDGQM RKLMEKQEAW 300 FEKMMKMIEN KEKERILREE EWRNQEKIRI EREHKFWANE RAWIEARDAT LMDALHKLTS 360 KESKSATTNP SSDQETEFRG LNENQNDNVK DEHWPESEIT RLIQLRTSME SRFQQMGFTG 420 DEVLWEEIAA KMSCLGYDKS SLMCKNKWDS INSYLMKCNK KRKENSTSSC YNVQINNEQQ 480 GRSYCEARHV SNDQNAISDG SCFRYLMGEA DQNLWENYEL KLSKGGDN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 6e-61 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 6e-61 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016508166.1 | 0.0 | PREDICTED: trihelix transcription factor PTL-like | ||||
Swissprot | Q9LZS0 | 1e-126 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | A0A1S4D476 | 0.0 | A0A1S4D476_TOBAC; trihelix transcription factor PTL-like | ||||
STRING | XP_009613783.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3063 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03680.1 | 1e-113 | Trihelix family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|