PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016508080.1 | ||||||||
Common Name | NtmybA2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 1043aa MW: 115056 Da PI: 4.9403 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 36 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTteEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_016508080.1 36 KGQWTTEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 82 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 64.9 | 1.5e-20 | 88 | 134 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde +v++vk++G++ W+tIa++++ gR +kqc++rw+++l XP_016508080.1 88 KGPWSKEEDEVIVELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 134 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 49.8 | 7.9e-16 | 140 | 182 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ ++++ gRt++ +k++w+ XP_016508080.1 140 KEAWTQEEELTLIRAHQIYGNK-WAELTKYLP-GRTDNAIKNHWN 182 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.723 | 31 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.36E-15 | 32 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-15 | 35 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-16 | 36 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-22 | 37 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.87E-14 | 39 | 82 | No hit | No description |
PROSITE profile | PS51294 | 34.007 | 83 | 138 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-32 | 85 | 181 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-19 | 87 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-18 | 88 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.31E-17 | 90 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 95 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.653 | 139 | 189 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-15 | 139 | 187 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-14 | 140 | 183 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.69E-11 | 142 | 182 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-21 | 143 | 189 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1043 aa Download sequence Send to blast |
MESDRISTPS DGTSSSLQRV RPLHGRTSGP TRRSTKGQWT TEEDEILRKA VQRFKGKNWK 60 KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDEVIV ELVKKYGPKK WSTIAQHLPG 120 RIGKQCRERW HNHLNPGINK EAWTQEEELT LIRAHQIYGN KWAELTKYLP GRTDNAIKNH 180 WNSSVKKKLD SYLASGLLAQ FPSLPNVNRQ NQSIPSSTKL QQSSEDDSVR KEGIEMEEAS 240 ECSQGSNLAG CSQSTSDMGN TFVHTREEGK LLEDSNYRKD PSSSSAPCSE YYTPAFEDIT 300 FSMAEVPSEL DESKLLEHNF SHDWAASMGK EWQFNPDDIP NISPLELMQD SSGLFMQCLT 360 GNGNHEMVTF PQQNAVKYEM TNVGSMVVGL DKPNEMFTSV EGCGMVYPEA GIPQYIPSET 420 GMNGADETAD SLICQSSNYQ ISEGGNMSIE NCCNPLCSHV MGTSSGQPFS IPSQFSSEQS 480 SLMFGTAANH FHNPSQGNPA QESHTSNSDG FLYPFESGTP CDNIMDDPLL EEQLDQTKDS 540 LQLVSVNDFR TTPSNTIQTC PLVNENSSVP EEQKDGGALY YEPPRFPSLD IPFFSCDLIQ 600 SGADAQQEYS PLGIRQLMMT SVNCLTPFRL WDSPSRDGSP DAVLRSAAKT FTSTPSILKK 660 RHRDLVSPLS EKRCEKKLGS DLRQESFSDL SKDFSRLDVM FDEAANEKAT KSSLTMDQTL 720 ELQASSEDKE NINPTEDGSK EEDKVRNGLS SERQLDGGEV HYKEKVTRKG TKGGANSAIG 780 KIKQPSGVLV ELNASDLFFS PDRFGAKSGR ATNLCSKALG NQYARRLEAA SNQGSVSSSF 840 ETSCFSVICS PRIRGKKDGS SFVITTSMQS APAPTALDNS AETSGNGVGA ETVSISGETP 900 YKRSIESPSA WKSPWFINSF LSSPRLDNEL NFEDLALFMS PGDRSYDAIG LMKQLSEQTA 960 GAFADAQEVL GGETPESILR GRNSKNQKAD ENHSLLSANV MSERRTLDFS ECGSPGKGKE 1020 TEIFCTSNNS FASPSSYLLK GCR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-69 | 36 | 189 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-69 | 36 | 189 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB056123 | 0.0 | AB056123.1 Nicotiana tabacum NtmybA2 mRNA for Myb, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016508080.1 | 0.0 | PREDICTED: myb-related protein 3R-1-like | ||||
TrEMBL | A0A1S4D3R5 | 0.0 | A0A1S4D3R5_TOBAC; myb-related protein 3R-1-like | ||||
STRING | XP_009782666.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3107 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |