PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507921.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family DBB
Protein Properties Length: 296aa    MW: 32118.2 Da    PI: 5.1539
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507921.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88.1e-07447542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     C+ +e+ e++  C  ++  lC +C ++ H        H++vpl
  XP_016507921.1  4 QCNVCESAEARVLCCADEAALCWSCDDKVHAAnklaskHQRVPL 47
                    7*****************************66899999999986 PP
2zf-B_box28.92.4e-095394237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     ++kC+ ++e    +fC +++ llC++C  ++H        H
  XP_016507921.1 53 PMPKCDICQETVGYFFCLEDRALLCRKCDIYIHTAnayvsaH 94
                    689********9*********************555566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.694147IPR000315B-box-type zinc finger
CDDcd000214.59E-8347No hitNo description
PfamPF006433.4E-5447IPR000315B-box-type zinc finger
SMARTSM003367.8E-10447IPR000315B-box-type zinc finger
SuperFamilySSF578458.24E-54593No hitNo description
PROSITE profilePS501198.665299IPR000315B-box-type zinc finger
SMARTSM003361.9E-145299IPR000315B-box-type zinc finger
PfamPF006439.5E-75394IPR000315B-box-type zinc finger
CDDcd000217.75E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKIQCNVCES AEARVLCCAD EAALCWSCDD KVHAANKLAS KHQRVPLSAS SSPMPKCDIC  60
QETVGYFFCL EDRALLCRKC DIYIHTANAY VSAHQRFLLT GVKVGLEPIN PAASASSGKS  120
HSVQKVLEPE SPPISKRTAP MSSNAPCNDV LPVQASGVED FARSSLSLVG GSTAGIIPQW  180
QFDEFLGMGD FNQNYGYMDY GSSKADSGKV GESDSSPILR DAEVEGDKCF SEVPETCWAV  240
PQIPSPPTAS GLYWPTKTLQ NPFDCAVFES DVSYSPLQNF QLQQSNGSGF KRRRAF
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615578.10.0PREDICTED: B-box zinc finger protein 22-like
RefseqXP_016507921.10.0PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM23e-91BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1S4D3G90.0A0A1S4D3G9_TOBAC; B-box zinc finger protein 22-like
STRINGXP_009615578.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-93light-regulated zinc finger protein 1