PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016507835.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 442aa MW: 47762.2 Da PI: 7.7137 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 222 | 271 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g XP_016507835.1 222 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 271 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.2E-33 | 222 | 280 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-14 | 222 | 271 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.712 | 222 | 279 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 222 | 280 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.1E-38 | 222 | 285 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 223 | 234 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.84E-15 | 230 | 281 | No hit | No description |
PRINTS | PR00367 | 1.3E-11 | 245 | 261 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MCLLKVANPR KSSEYVRFTD TSDSETTTTT AAEGGAQPYG QGDQFFEEMI QQQIHQEADY 60 LLSTSSAMPM FTGYSQTREM STMVTALTHV VSCQSYRPDI SGSVTSSFGG GGSGIYSANS 120 PSSAYSSSSS GSRAGQKRSR DQEESVTQIL EQSHHGVYGG FGEFRAGLPS SSVKAATSMV 180 APSNTTISTI TTVPAFTTTT TTTTTAAAGG STEETGGERR RRYRGVRQRP WGKWAAEIRD 240 PHKAARVWLG TFDTAEAAAR AYDEAALRFR GNRAKLNFPE NVSRLLPQLQ ASQPTTRLAI 300 SSSSTSASSQ LQFMAPISQP TAFFQPHQQP IQSSDMTRDY WEYSQLLQNP GDFFDQQQPS 360 GLLEQMFFAS SRAVLHSNTT SSLGNSAASS PSYPLLFSGQ QSSYYRPQTN QIQGNSSSSN 420 SSSSNISAPF WSSSSHYPPS SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-23 | 221 | 282 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 222 | ERRRRY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792228.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2 | ||||
Refseq | XP_016507835.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2 | ||||
TrEMBL | A0A1S4D324 | 0.0 | A0A1S4D324_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X2 | ||||
TrEMBL | A0A1U7XMV6 | 0.0 | A0A1U7XMV6_NICSY; ethylene-responsive transcription factor ABR1-like isoform X2 | ||||
STRING | XP_009792227.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 4e-16 | ERF family protein |