PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016507725.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LSD | ||||||||
Protein Properties | Length: 143aa MW: 15036.5 Da PI: 7.4773 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.3 | 1.2e-13 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V XP_016507725.1 28 CSGCRNLLLYPVGATSVCCAVCNAV 52 ************************9 PP | |||||||
2 | zf-LSD1 | 46.8 | 4.7e-15 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV XP_016507725.1 67 CGGCHTLLMYIRGATSVQCSCCHTV 91 ************************9 PP | |||||||
3 | zf-LSD1 | 41.9 | 1.6e-13 | 105 | 129 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V XP_016507725.1 105 CGNCRMLLMYQYGARSVKCAVCNFV 129 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 9.6E-13 | 25 | 55 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 5.55E-5 | 28 | 126 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 1.4E-10 | 28 | 52 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.5E-15 | 64 | 93 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-12 | 67 | 91 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.8E-11 | 102 | 130 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-12 | 105 | 129 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MPVPLAPYPT PPTSFTPPAN GTQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLAMEANQV AHVNCGNCRM LLMYQYGARS 120 VKCAVCNFVT ACSLDNTGFN EHN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010787 | 3e-47 | AP010787.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0012J05, complete sequence. | |||
GenBank | HG975447 | 3e-47 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975520 | 3e-47 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016507725.1 | 1e-100 | PREDICTED: protein LSD1-like | ||||
Swissprot | Q93ZB1 | 4e-74 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A1S4D2R4 | 2e-98 | A0A1S4D2R4_TOBAC; protein LSD1-like | ||||
STRING | VIT_02s0012g00990.t01 | 5e-83 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1679 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 2e-60 | lsd one like 1 |
Publications ? help Back to Top | |||
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