PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016507590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 470aa MW: 51561.9 Da PI: 5.1087 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.5 | 3.4e-39 | 116 | 175 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny++sqPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_016507590.1 116 PDKILPCPRCNSMETKFCYFNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNS 175 68999****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-29 | 113 | 173 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.2E-32 | 118 | 174 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.798 | 120 | 174 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 122 | 158 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MSELKDPAIK LFGKTIQLTD IPESSATLQD DSSPEETNEE EDIETHKDYF GGNVDDDKDE 60 MGTLTGKELQ GQNSDPSRSD TIEGPPVDND CSTRPSKSEE EQREASNSQE KILKRPDKIL 120 PCPRCNSMET KFCYFNNYNV SQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KNKNSIPHYR 180 QMSVPETFPN AQTDYPNGIQ QPILAFGSHK PLCESMASVL NIADKTMHNC PPNGFYKPEE 240 SGVQVSYGAG DNGDDHSRRS SVSAANSDDE VNKIGPDLLR KNCPSFPPYL ACYPGAAWPY 300 PCSSVHWTSA VPPPGYCPPV FPMPFYPTAA YWGYNVAGSW NVPLVSPPTA SLTQTPTTSG 360 PNSPTLGKHS RDENILKPLS SKEEPSNESN HEKCLWVPKT LRIDDPGEAA KSSIWATLGI 420 KHDSVDSVGG SPFSTFQSKN DGNNSVSENS TVLQANPAAL SRSRNFNEGL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016507590.1 | 0.0 | PREDICTED: cyclic dof factor 3-like | ||||
TrEMBL | A0A1S4D2D1 | 0.0 | A0A1S4D2D1_TOBAC; cyclic dof factor 3-like | ||||
STRING | XP_009598842.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA532 | 24 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 5e-93 | cycling DOF factor 2 |