PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507496.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 311aa    MW: 35476.5 Da    PI: 6.3106
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507496.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-12853146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l + vk+ G+++W++I ++  + Rt+k+c++rw +
   XP_016507496.1  8 KGPWKAEEDEVLRKHVKKCGPRDWSSIRSKGLLQRTGKSCRLRWVN 53
                     79*************************8887799**********87 PP
2Myb_DNA-binding45.91.3e-1464103344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++++eE+   +++ +q+G++ W+tIa +++ gRt++++k++w
   XP_016507496.1  64 KFSAEEERTVIELQEQFGNK-WATIATYLP-GRTDNDVKNFW 103
                      79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.152359IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-20456IPR009057Homeodomain-like
SuperFamilySSF466895.86E-286103IPR009057Homeodomain-like
SMARTSM007172.7E-10757IPR001005SANT/Myb domain
CDDcd001671.40E-101055No hitNo description
PfamPF139211.2E-111161No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1857109IPR009057Homeodomain-like
PROSITE profilePS5129417.30660111IPR017930Myb domain
SMARTSM007171.3E-1261109IPR001005SANT/Myb domain
CDDcd001671.56E-1064103No hitNo description
PfamPF002491.2E-1264103IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSDSMIKKGP WKAEEDEVLR KHVKKCGPRD WSSIRSKGLL QRTGKSCRLR WVNKLRPNLK  60
NGVKFSAEEE RTVIELQEQF GNKWATIATY LPGRTDNDVK NFWSSRQKKL ARIMRTSVPQ  120
PSKPQKSNNR EPPALQKLPS VEGPKLSSLA EERSLSMSQY CPSSYMNNPD TINMVQWPEL  180
VNSTSLPFEP DLLQPEFIPN EKRTCFGSQI TLPFPQIPLQ ADFGHPLESQ ILPMKLEESD  240
FLDFFGQLSA SDIGDVQVPL VPASWSGPEK SSEIITMKRE IDVPLTPDSF IDDFPMDMFD  300
HIDPLPSPFN W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-25610525122MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0325371e-112AB032537.2 Nicotiana tabacum B25 mRNA for hypothetical protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507496.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1S4D2910.0A0A1S4D291_TOBAC; myb-related protein Myb4-like
STRINGXP_009767999.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.17e-75MYB family protein