PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016507418.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 338aa MW: 36871.7 Da PI: 8.7329 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.9 | 3e-12 | 49 | 75 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C++++rtG C yG++C+++H++ XP_016507418.1 49 PGVPDCSYYMRTGSCGYGANCRYNHPR 75 5789*********************96 PP | |||||||
2 | zf-CCCH | 39.6 | 8.9e-13 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++CkF+H++ XP_016507418.1 96 EPMCQYYLRTGACKFGASCKFHHPR 120 789********************96 PP | |||||||
3 | zf-CCCH | 37.9 | 3e-12 | 200 | 226 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++tG Ck+G++C+++H+p XP_016507418.1 200 PGQPTCQYYMKTGDCKFGSSCRYHHPP 226 57899********************97 PP | |||||||
4 | zf-CCCH | 28.2 | 3.2e-09 | 247 | 272 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C+f++ G+Ck+G CkF H++ XP_016507418.1 247 GVQPCSFYLLKGFCKFGRACKFDHPM 272 6789********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.558 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.5E-7 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-10 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 52 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-5 | 54 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-6 | 98 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 99 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.239 | 199 | 227 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-6 | 199 | 226 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-9 | 201 | 226 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 203 | 227 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 205 | 225 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.587 | 245 | 273 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-6 | 245 | 272 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-7 | 247 | 272 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 247 | 274 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 249 | 270 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MELYGRSTGS NGSQSDHQSE WVPVEQESGL DESMQRLGLW GREIYPERPG VPDCSYYMRT 60 GSCGYGANCR YNHPRDRAYG AKMQLERVEF PERLGEPMCQ YYLRTGACKF GASCKFHHPR 120 NLGGSLSNVP LNTYGYPLRP GPVSPALSPG AQPSAAVTSI YGISQLASST HAFAGPYSPL 180 HSAASPSSKT QKEKSFPDRP GQPTCQYYMK TGDCKFGSSC RYHHPPDWIA SKTNFAISPL 240 GLPLRPGVQP CSFYLLKGFC KFGRACKFDH PMGTVQYSSS ASSLPDLPIA PYMLRSSFAF 300 APTLLPELQA GFVSGSKVDA ASLSRPSSSL KVQLVELT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 1e-104 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016507418.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2 | ||||
Refseq | XP_018633466.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X2 | ||||
Swissprot | Q84W91 | 1e-102 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A1S4D262 | 0.0 | A0A1S4D262_TOBAC; zinc finger CCCH domain-containing protein 32-like isoform X2 | ||||
STRING | XP_009626457.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 1e-109 | C3H family protein |