PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016507284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 598aa MW: 64951.9 Da PI: 6.1507 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.5e-30 | 334 | 392 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ XP_016507284.1 334 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGTHNHP 392 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-33 | 318 | 394 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.37E-28 | 326 | 394 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.677 | 328 | 394 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 333 | 393 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.2E-27 | 335 | 392 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 598 aa Download sequence Send to blast |
MANGSGLSFD PDPIKHFLPF LEPKKLFKFQ PLLTSMESSP YKNRSPPSTI QFPVNLNCSN 60 TDHNQEEEEG QKIRPVIDEM DFFADHKKDG SNSEEAATTA NNTTMDTERK ESNTPPPELD 120 FNINTGLHLL TANTYSDQSI VEDGLSPNSE DKRTKNELAV LQAELERMNG ENRRLKDMLN 180 QATNDYSNLH MQMMTMIQQQ QHQENDQRDG KSDEVRQQIQ SKNGLGGGGQ IVPRQFMDLG 240 LAAATGSEVE ETSLSSSEGR SGRDKSRSPT NNMESGSTCG IGREDSPEKG SPGWGPNKIP 300 RLGNGSKTTD QATEATMRKA RVSVRARSEA PMITDGCQWR KYGQKMAKGN PCPRAYYRCT 360 MAAGCPVRKQ VQRCAEDRTI LITTYEGTHN HPLPPAAMAM ASTTSSAARM LLSGSMPSAD 420 GLMNSNFFAR TLLPCSSSMA TISASAPFPT VTLDLTQSPN PLQFPRSPNQ FQVPFSNPPH 480 NMLSNPAAAL LPQIFNQALY NQSKFSGLQL SQDSEGQNAS TLPSSIHQSN HNPLADTVNA 540 LTADPNFTAA LAAAITSLIG NPQQPNNGST NNTTAITTTA NNQNSSVTNG NNTSNGNQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-22 | 320 | 396 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF736800 | 0.0 | KF736800.1 Capsicum annuum WRKY6 (WRKY6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009614876.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Refseq | XP_016507284.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-139 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A1S4D1Y8 | 0.0 | A0A1S4D1Y8_TOBAC; probable WRKY transcription factor 31 | ||||
STRING | XP_009614876.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA945 | 24 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-120 | WRKY family protein |