PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507147.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 715aa    MW: 82454.7 Da    PI: 6.7186
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK54.81.9e-17539586350
          RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 
                     ++++ +dl+++F++++ dAA +L+v+ ++LKr CR+yGI+RWP  k k
  XP_016507147.1 539 DTVNYDDLKQHFNKNLSDAAESLQVSRSTLKRLCRKYGIRRWPLSKRK 586
                     678999*************************************87655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.243525610IPR003035RWP-RK domain
PfamPF020422.8E-17541587IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.602.0E-5550577IPR009057Homeodomain-like
SuperFamilySSF542775.33E-16617706No hitNo description
Gene3DG3DSA:3.10.20.2402.3E-15622706No hitNo description
SMARTSM006663.9E-7625707IPR000270PB1 domain
PROSITE profilePS5174517.806625707IPR000270PB1 domain
PfamPF005647.3E-12626705IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MQGIEKSQFP VNDDVVYEVY TSSEFKNYMG ESLSCSEERS NFHLMVFWSN NETESNFTNN  60
LIETSVKQKI KAALQRIETS QVILLQFWGL EKIEGRNFLT TAGQPFGLRY LYKGLCWYRK  120
HCQGYKYSVN NKGESGEQGT EKVHLFGPPA RVFQEKLPES STHVGYYTNE EFPIRDHAVR  180
CGVRTYLALP VFEPIGKKCV GVIELVTVWK GGYLTYEVEK VLNALEGVDL KCPKLYLQKG  240
RKVQEGKQSD REEIKRMLKI VRETHKLPFV RVWIPCKNLE MDHNGMYRGC TEHVISASNE  300
VYYVADEEMD ANDHVYDDYY YDDMLCFRDI SKLQPLQKDQ GVVGKAFFSG KLCYCENITE  360
FSIIEYPLVH YARWCGLTSS FAICLKNGVE VYILELFLPP DNGDPEILLG SILSTMGQHF  420
QNFKFASGQE LGHDSSVQVI KAYSDKNVDY FHICQTRESL FMPEVLCDEE RRNWLMKGNE  480
NHTEKEAISE CTIQNSVDNG QQQIMVQSDV LNTDIQVISE KQCVSVTHFQ KESRTRTKDT  540
VNYDDLKQHF NKNLSDAAES LQVSRSTLKR LCRKYGIRRW PLSKRKKTLG ESDYQPLNML  600
PKKKKAITSA TTSTHENHGN SSSSSITVKA TYGDDMMKFK LYSFSRKEDL DKELDKRLQL  660
PIGKFRTKYM DEDNDYIWIA CDDDLRDCFN NALSLGKNTI KMLVLPAAIN HSLEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1584604RKKTLGESDYQPLNMLPKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773780.10.0PREDICTED: protein NLP7-like isoform X1
RefseqXP_016507147.10.0PREDICTED: protein NLP7-like isoform X1
TrEMBLA0A1S4D1500.0A0A1S4D150_TOBAC; protein NLP7-like isoform X1
TrEMBLA0A1U7WHR30.0A0A1U7WHR3_NICSY; protein NLP7-like isoform X1
STRINGXP_009773780.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13879911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.13e-86NIN like protein 7