PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016507077.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 243aa MW: 27376.6 Da PI: 6.2383

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016507077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.3	9.4e-35	4	60	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + l+cprC stntkfCyynny+ sqPr+fCk+C+r+Wt+GG lrnvPvGggr++++ XP_016507077.1 4 PEPLNCPRCGSTNTKFCYYNNYNKSQPRHFCKGCKRHWTEGGILRNVPVGGGRKNKR 60 6789***********************************************976654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-22	1	60	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-30	6	59	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.981	7	61	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	9	45	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MAKPEPLNCP RCGSTNTKFC YYNNYNKSQP RHFCKGCKRH WTEGGILRNV PVGGGRKNKR 60 LKITREKSNS PVVVDDEEKN VFDNLYHELN LPSSSLPHDT ITNNLHLNSP KILSHSCQTL 120 KRCTTSERSD TDPTVFLKSP SNIAKTGVPQ DEDMLLSFSS AIGSSFNKIP CSIPTSADQS 180 SNIYNYMENL DSTMEESTIT WQGPGTSSLM MENMQSYWNW NDIEALVSGD DLNILWDDTE 240 IKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	122	TLKRC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016507077.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like
TrEMBL	A0A1S4D0Y2	0.0	A0A1S4D0Y2_TOBAC; dof zinc finger protein DOF2.5-like
STRING	XP_009619922.1	1e-179	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6171	20	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	2e-28	Dof family protein