PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016507073.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Nin-like | ||||||||
Protein Properties | Length: 123aa MW: 14277.7 Da PI: 10.3349 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 72.5 | 5.5e-23 | 31 | 81 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l+d + y +lpi+ AAk+L++c+Tv+K+ CR+ G+ RWP+Rkiks+ XP_016507073.1 31 TGKLRLKDFAGYLHLPIEVAAKKLNICPTVMKKVCRRDGLLRWPYRKIKSI 81 56899********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.438 | 21 | 101 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.3E-20 | 34 | 81 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MNQQEIKNEG EVNCNDMRYE KIPLSAQRER TGKLRLKDFA GYLHLPIEVA AKKLNICPTV 60 MKKVCRRDGL LRWPYRKIKS IRRKISKREK SLSSNDVEER ASAKADIAKL EEELAKIFEA 120 FVG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009771409.1 | 4e-83 | PREDICTED: uncharacterized protein LOC104221948 | ||||
Refseq | XP_016507073.1 | 1e-85 | PREDICTED: protein RKD4-like | ||||
TrEMBL | A0A1S4D176 | 2e-84 | A0A1S4D176_TOBAC; protein RKD4-like | ||||
TrEMBL | A0A1U7W9T0 | 1e-81 | A0A1U7W9T0_NICSY; uncharacterized protein LOC104221948 | ||||
STRING | XP_009771409.1 | 2e-82 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3505 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 8e-08 | Nin-like family protein |