PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016507037.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 300aa    MW: 32867.7 Da    PI: 6.9772
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016507037.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.71.7e-3094147155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  XP_016507037.1  94 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 147
                     59*******************.********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.87E-2091151IPR009057Homeodomain-like
PROSITE profilePS5129411.05991150IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-3093152IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-2495147IPR006447Myb domain, plants
PfamPF002491.1E-797146IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MREEDSNWFA KWEEELPKPE ELMPLSQTLI SPDLAIAFDI ANPTSPNNPQ NKLQQQTQIP  60
QSSQQQPNSS AEFESAELNG LGGGGDEPAR TLKRPRLVWT PQLHKRFVDA VAHLGIKNAV  120
PKTIMQLMSV DGLTRENVAS HLQKYRLYLK RMQGLSNGGS GGNSGQSLSG AGVDSAMDNL  180
FASSPVPAHF LHPAGRGNPD QFLPFVPVTS MQHHNHHMGV VVGHHHPQVQ PQYRQFGSPA  240
NGHFDHHPFL SRQSQQQVQR MGTSVHNGSP VVSPYVDDVD SSAAPVNGRK VLTLFPTGDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-3294150157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606424.10.0PREDICTED: transcription factor PCL1-like
RefseqXP_016507037.10.0PREDICTED: transcription factor PCL1-like
SwissprotO222106e-61MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A1S4D0U40.0A0A1S4D0U4_TOBAC; transcription factor PCL1-like
STRINGXP_009606424.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24322354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.16e-73G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]