PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016506975.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 296aa    MW: 33609.8 Da    PI: 9.5729
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016506975.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.3e-1656144198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffkv++p   + ++ l++p +f+ + +g+k  s + tl++ +  +W+v++   ++++  +++ kGW++Fv+  +L+ gDf vF++ g+++f   v
  XP_016506975.1  56 FFKVMVP---GFHAKLTIPPDFCLKLKGEK--SEKATLKHGK-GTWNVEI--GRSKNDvIWFDKGWEQFVQNYNLRIGDFAVFEHLGNMNF--SV 140
                     6777744...456679*******9998885..5578888855.59*****..77777779*************************999999..77 PP

                     EEE- CS
              B3  95 kvfr 98 
                     ++++
  XP_016506975.1 141 SLLD 144
                     7766 PP
2B346.75.6e-152092841488
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                       l +p +f+ ++ +   +++ +tl+ +sg s  v l+++ ++++  +++t+GW++F  +n+Lk+gD+++F+ d++ s
  XP_016506975.1 209 PYLHIPTEFCHSNALL--QNTIITLTGPSGISCPVSLRICSGGKTlyVIMTTGWRNFFLSNKLKVGDVCIFHIDRTnS 284
                     4589******999777..5678***************6655555588999**********************887634 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.25253146IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-1954148IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-1554144No hitNo description
Gene3DG3DSA:2.40.330.103.9E-2154148IPR015300DNA-binding pseudobarrel domain
PfamPF023624.7E-1356143IPR003340B3 DNA binding domain
SMARTSM010197.7E-1756146IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-16192283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-17194282IPR015300DNA-binding pseudobarrel domain
CDDcd100179.84E-15195284No hitNo description
SMARTSM010191.6E-4195288IPR003340B3 DNA binding domain
PROSITE profilePS5086310.419196296IPR003340B3 DNA binding domain
PfamPF023621.2E-12210285IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MVIHLLYYIG AIVFDLKTFH AYSISQNYSQ NLTVPSSSSS SSPSTMENEL PISRRFFKVM  60
VPGFHAKLTI PPDFCLKLKG EKSEKATLKH GKGTWNVEIG RSKNDVIWFD KGWEQFVQNY  120
NLRIGDFAVF EHLGNMNFSV SLLDSTGCDK KYLMLEDGKQ QQVPSQVKSL ECRIEKRKPE  180
GDVLLHQYVK GSSEFTARIK EYNVRKRSPY LHIPTEFCHS NALLQNTIIT LTGPSGISCP  240
VSLRICSGGK TLYVIMTTGW RNFFLSNKLK VGDVCIFHID RTNSDSKSIT MNVRVM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773257.10.0PREDICTED: B3 domain-containing protein REM8-like
RefseqXP_016506975.10.0PREDICTED: B3 domain-containing protein REM8-like
TrEMBLA0A1S4D0L20.0A0A1S4D0L2_TOBAC; B3 domain-containing protein REM8-like
TrEMBLA0A1U7VZR10.0A0A1U7VZR1_NICSY; B3 domain-containing protein REM8-like
STRINGXP_009773257.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.18e-21B3 family protein