PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016506872.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 24174.2 Da PI: 7.0058 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 5.9e-17 | 58 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + + +Wv+e+r p +k+ r++lg++ tae+Aa+a++ a+ +l+g XP_016506872.1 58 PVYRGVRKRN-SDKWVCEVRQP---NKKSRIWLGTYPTAEMAARAHDVAAIALRG 108 68*****888.7******8887...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.4E-13 | 58 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-28 | 59 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-31 | 59 | 118 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 59 | 118 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.72 | 59 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.42E-29 | 60 | 118 | No hit | No description |
PRINTS | PR00367 | 7.2E-8 | 60 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-8 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MNIFRSYYSD SLTESSSLSD NSSSPCNRAN LSDGEVLLAL NNPKKRAGRK KFRETRHPVY 60 RGVRKRNSDK WVCEVRQPNK KSRIWLGTYP TAEMAARAHD VAAIALRGRS ACLNFADSVW 120 KLPVPASADA KDIQRAAAEA AEAFRPSESE AVSGDSCGGS GTTPEKPESN HCFMDEEALF 180 CMPGLLASMA EGLMLPPPHY VEVGDYVEAA ADMHLWSYII |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU727156 | 1e-155 | EU727156.1 Nicotiana tabacum DREB2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016506872.1 | 1e-164 | PREDICTED: dehydration-responsive element-binding protein 1D-like | ||||
Swissprot | Q9FJ93 | 6e-69 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A1S4D0D0 | 1e-162 | A0A1S4D0D0_TOBAC; dehydration-responsive element-binding protein 1D-like | ||||
STRING | XP_009784267.1 | 1e-163 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 1e-59 | C-repeat/DRE binding factor 1 |
Publications ? help Back to Top | |||
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