PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016506871.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 203aa    MW: 22781.8 Da    PI: 8.0563
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016506871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.31.9e-134797155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr +  +++Wv e+r+    +k+ r++lg++ +a++Aa+a++ a  +l+g
  XP_016506871.1 47 PVYRGVRKRN-SNKWVFEVRET---NKKSRIWLGTYPSADMAARAHDVATIALRG 97
                    68*****888.7****996662...347*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-104797IPR001471AP2/ERF domain
PROSITE profilePS5103219.21648105IPR001471AP2/ERF domain
SMARTSM003808.4E-2248111IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-1848107IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.6E-2648106IPR001471AP2/ERF domain
PRINTSPR003674.2E-74960IPR001471AP2/ERF domain
CDDcd000181.74E-2449107No hitNo description
PRINTSPR003674.2E-77187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MAESSPLSNN SSSCINRADL SEEEVMLASN NSKKRAGRKK FQEIRHPVYR GVRKRNSNKW  60
VFEVRETNKK SRIWLGTYPS ADMAARAHDV ATIALRGRFA CLNFVDSVWK LPIPTSSDAN  120
DIQRVAAKAA EAFRPSDQSE RVSGEYPEML ESNKSFMDEE ALFCMPGLLT NMAEGLMLPP  180
PHYVKVGDNV ETAADMTLWS YSI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016506871.11e-151PREDICTED: dehydration-responsive element-binding protein 1D-like
SwissprotQ9FJ934e-62DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A1S4D0E91e-149A0A1S4D0E9_TOBAC; dehydration-responsive element-binding protein 1D-like
STRINGXP_009784265.11e-148(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.14e-64C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]