PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016506786.1
Common NamemybAS2
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 474aa    MW: 52665.1 Da    PI: 5.1013
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016506786.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-152269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l ++vk+ G g+W+++ r  g+ R++k+c++rw ++l
   XP_016506786.1 22 KGPWTAAEDAILMEYVKKNGEGNWNAVQRNSGLMRCGKSCRLRWANHL 69
                     79******************************************9986 PP
2Myb_DNA-binding48.91.5e-1575118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++ eE+  +v+++++lG++ W++ a+ m+ gRt++++k++w++
   XP_016506786.1  75 KGAFSLEEERFIVELHAKLGNK-WARMAAQMP-GRTDNEIKNYWNT 118
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.441769IPR017930Myb domain
SMARTSM007173.6E-122171IPR001005SANT/Myb domain
SuperFamilySSF466898.59E-2921116IPR009057Homeodomain-like
PfamPF002491.2E-132269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-212376IPR009057Homeodomain-like
CDDcd001674.98E-102469No hitNo description
PROSITE profilePS5129424.97370124IPR017930Myb domain
SMARTSM007173.2E-1574122IPR001005SANT/Myb domain
PfamPF002492.7E-1475118IPR001005SANT/Myb domain
CDDcd001676.85E-1177120No hitNo description
Gene3DG3DSA:1.10.10.608.0E-2477123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAPDGGGLKA RNNGGTRQVL KKGPWTAAED AILMEYVKKN GEGNWNAVQR NSGLMRCGKS  60
CRLRWANHLR PNLKKGAFSL EEERFIVELH AKLGNKWARM AAQMPGRTDN EIKNYWNTRL  120
KRRQRAGLPI YPQDIQPQLN QQNISIPSPF DNNPQNSNYI NNPPLSLLDI FNPSTMKPSN  180
ISNQYQSNNN PSPYLTNNNN NNQLKFFRDP RVRLSLTLAS SIRNSQHSSM VAPVPNNFNQ  240
SYSNSMPVPP LQHNYPNFGS TTRPFTGIPS NPNGLILGMG VQNNPSVQSS MPETKTCSRN  300
TGSDFMNTTS SDGADNYDIN PGLSRGNSGL LEDLLEESQA LTRVEKIEEN CPIENEAIKG  360
KLVWEEYGLS EEAEDIILTE ESTFSFAQEG GDNATPNKHS EDSSSLNSSS GITTKEGSLE  420
LANQVDEDIM RFLDNFPVGV PVPDWCNDEN DEQNTSNGQS FECDQIQSHC SKSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28201235107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1984980.0AF198498.1 Nicotiana tabacum anther-specific myb-related protein 2 (mybAS2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313064.10.0transcription factor GAMYB-like
TrEMBLA0A1S4D0640.0A0A1S4D064_TOBAC; transcription factor GAMYB-like
STRINGXP_009781770.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-70myb domain protein 101
Publications ? help Back to Top
  1. Yang S, et al.
    Novel anther-specific myb genes from tobacco as putative regulators of phenylalanine ammonia-lyase expression.
    Plant Physiol., 2001. 126(4): p. 1738-53
    [PMID:11500571]