PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016506481.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27181.7 Da PI: 4.7923 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.3 | 4.7e-14 | 10 | 49 | 2 | 41 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 ri ++s r+ + kR + ++KKAeE S+LCd+ vaviif XP_016506481.1 10 RIRSESVRNSILNKRAASLFKKAEEFSILCDVAVAVIIFN 49 79999999999***************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-10 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.572 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.74E-13 | 2 | 60 | No hit | No description |
SuperFamily | SSF55455 | 4.32E-17 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-13 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-5 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MARKKLRHTR IRSESVRNSI LNKRAASLFK KAEEFSILCD VAVAVIIFNQ GEIQPIAYPS 60 ITQAKDILMS YLSFSEAERL KKLVKHETYL LEKVNEQEEK ISKIEKLNEG KEMDILFNQL 120 VEGKNTNELD ARQLKGLLKL SAAKMAKLNE RKKQFNQQDQ PSESLYRPSD FKPVCENVAN 180 QTSDLQDFVP ATNLMEDLIN NPWFVENMAA DQNEFGTESA PEEGNDNNAG DDGNPEDLN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009593028.1 | 1e-176 | PREDICTED: MADS-box protein AGL71-like | ||||
Refseq | XP_016506481.1 | 1e-176 | PREDICTED: MADS-box protein AGL71-like | ||||
TrEMBL | A0A1S4CZD3 | 1e-174 | A0A1S4CZD3_TOBAC; MADS-box protein AGL71-like | ||||
STRING | XP_009593028.1 | 1e-175 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 2e-19 | AGAMOUS-like 96 |