PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016506469.1 | ||||||||
Common Name | NtERF#206 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 25649.5 Da PI: 8.9622 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.4e-20 | 31 | 80 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp + + r++lg+f+taeeAa+ ++aa+++++g XP_016506469.1 31 HYRGVRKRP-WGRYAAEIRDPLK---NSRVWLGTFDTAEEAARVYDAAAREFRG 80 6********.**********865...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.04E-31 | 31 | 88 | No hit | No description |
PROSITE profile | PS51032 | 23.828 | 31 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-31 | 31 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-37 | 31 | 94 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-12 | 31 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 31 | 89 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.4E-11 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-11 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MEHNEKGGAA VTVTVPAAEI VNGGGVSKKV HYRGVRKRPW GRYAAEIRDP LKNSRVWLGT 60 FDTAEEAARV YDAAAREFRG TKAKTNFPPP AVIKDSSPAP LNLNLGSGSS VGSARSFTYL 120 KQNNLNLGGG SSVGSAASFT YLKQNYQFRH VPAAGGFAPP SARDYQYLEA LTGAEVSNRD 180 PSSQRGTVAF LGGGDSVSGC GIPTESESSS VLNYNFNDLN QPTITTNCLN LDLNLPPPDY 240 M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-22 | 27 | 88 | 1 | 63 | ATERF1 |
3gcc_A | 6e-22 | 27 | 88 | 1 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB669083 | 0.0 | AB669083.1 Nicotiana tabacum NtERF#206 gene for ethylene response factor #206, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009591053.1 | 1e-178 | PREDICTED: ethylene-responsive transcription factor 8-like | ||||
Refseq | XP_016506469.1 | 1e-178 | PREDICTED: ethylene-responsive transcription factor 8-like | ||||
TrEMBL | R4WAR7 | 1e-177 | R4WAR7_TOBAC; Ethylene response factor #206 | ||||
STRING | XP_009591053.1 | 1e-177 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15195 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-24 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Entrez Gene | 107824231 |
Publications ? help Back to Top | |||
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