PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016506458.1 | ||||||||
Common Name | NtERF#208 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 23624.5 Da PI: 10.3574 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.8e-19 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp g+++r++lg+f+ta eAaka++ a++ l+g XP_016506458.1 30 HYRGVRKRP-WGRYAAEIRDP---GQKTRVWLGTFDTAVEAAKAYDTAARLLRG 79 6********.**********8...557***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 30 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-12 | 30 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.55 | 30 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-21 | 30 | 87 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-37 | 30 | 93 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.72E-30 | 30 | 86 | No hit | No description |
PRINTS | PR00367 | 1.4E-10 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAENGHLAGT VAVPVPTANG GVGVPSDEVH YRGVRKRPWG RYAAEIRDPG QKTRVWLGTF 60 DTAVEAAKAY DTAARLLRGR RAITNFSPTT EDNLMNTRDF MAKLSTRNHV NINTNNHGPF 120 QNRDIGSSSG GGGAVRIPLP IQNPQSRHFP VAGCSAPLQL ARDRCYVEAL TRAGVIINRD 180 PSSQTKTVDF IGGGVNGGSE PPTTSTRALN LELTLAPPGN M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-21 | 19 | 86 | 3 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB669084 | 0.0 | AB669084.1 Nicotiana tabacum NtERF#208 gene for ethylene response factor #208, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016506458.1 | 1e-162 | PREDICTED: ethylene-responsive transcription factor 8-like | ||||
TrEMBL | R4WAH8 | 1e-161 | R4WAH8_TOBAC; Ethylene response factor #208 | ||||
STRING | XP_009591054.1 | 1e-161 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15350 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-31 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Entrez Gene | 107824225 |
Publications ? help Back to Top | |||
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