PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016506434.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 233aa MW: 26125.8 Da PI: 5.9118

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016506434.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.6	1.2e-39	8	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+Cv+apyf+ eq + +f ++hk+FGasnv+kll+++p ++r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+a+l XP_016506434.1 8 PCGACKFLRRKCVKGCVFAPYFCYEQgATHFSAIHKVFGASNVSKLLAHIPMTDRGEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVVNLQAQL 102 7***********************89***************************************************************** PP DUF260 95 allkee 100 a+lke+ XP_016506434.1 103 ASLKEQ 108 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.356	7	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-37	8	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MTGSAGSPCG ACKFLRRKCV KGCVFAPYFC YEQGATHFSA IHKVFGASNV SKLLAHIPMT 60 DRGEAAVTIA YEAQARLQDP IYGCVSHIFA LQQQVVNLQA QLASLKEQAA HQNLQNGSNY 120 TNPNYEKFQD LQSWFHQSEN SNTNMSQFDS SLTSNNIGST PYYGSHENMT STNYHMGSYE 180 NMMLPKENMS SFEEGSCSID SYDMQTDHHN SQWTFQDDAD DLQSVAFRYL QHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-36	2	114	5	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-36	2	114	5	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ718286	1e-139	AJ718286.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT4-42-390B, cultivar Bright Yellow 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009771981.1	1e-178	PREDICTED: LOB domain-containing protein 14-like
Refseq	XP_016506434.1	1e-178	PREDICTED: LOB domain-containing protein 14-like
Swissprot	Q9SLB6	1e-63	LBD17_ARATH; LOB domain-containing protein 17
TrEMBL	A0A1S4CZL5	1e-176	A0A1S4CZL5_TOBAC; LOB domain-containing protein 14-like
TrEMBL	A0A1U7W453	1e-176	A0A1U7W453_NICSY; LOB domain-containing protein 14-like
STRING	XP_009771981.1	1e-177	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8446	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	5e-56	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]