PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016506310.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 453aa    MW: 51012.2 Da    PI: 5.7697
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016506310.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.91.9e-93574502373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfsh 95 
                     ++lL++cA+a++s+d +laq++L+ l+++a pdgd++qRl+  f++AL  r a+   +++k l+++ +++++ ++ ++  l  f++++P+++f++
  XP_016506310.1  57 EQLLVHCANAIESNDPTLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIVRAAK--IGTCKLLTANLNHSMEtHKFSIIELAGFVDLTPWHRFGF 149
                     79****************************************************..667777766666554424455555555************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...... 181
                      +aN aIleaveg + vHi+Df++++++Q p+L++a+++R egpp +++T+ g+ e        ++ee+g +L +fA++ +v +ef+v+      
  XP_016506310.1 150 TAANGAILEAVEGYSIVHIVDFSLTHCMQIPTLIDAISTRLEGPPLVKLTVAGATEDLppmLDLSYEELGAKLVNFARSRNVMMEFRVIpssssd 244
                     ******************************************************776698888999**********************9776333 PP

            GRAS 182 .vakrledleleeLrvkp......gEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                           +++ +e+Lrv++      gEal++n++++lh++               +++ s++s r+ +Lk++++l P++vv+v+++ad +s++++ 
  XP_016506310.1 245 gF----SNV-IEQLRVQNlirpenGEALVINCHMMLHYISeettvrsprfpldqSSNSSVSSFRSMFLKAIRNLDPTIVVLVDEDADFTSNNLVC 334
                     33....333.66666666666678****************************976666677799******************************* PP

            GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                     r+ +a++y +  +d++++ lp+ s++r+++E+  + ++i+nv+a+eg +r er e +++W +r+++a F++  +se+ ++++k++l +++  g+ 
  XP_016506310.1 335 RLRSAFNYLWIPYDTVDTFLPKGSKQRQWYEAD-ICWKIENVIAHEGVQRLERLEPKSQWVQRMRNANFRSSGFSEDSVSEVKSMLDEHA-AGWG 427
                     *********************************.********************************************************.999* PP

            GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                     ++ +++ +vl+Wk++++v+++aW
  XP_016506310.1 428 LKRDEEDVVLTWKGHNVVFATAW 450
                     *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.48930432IPR005202Transcription factor GRAS
PfamPF035146.5E-9157450IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MMQFTESFQP SLHQQVSPIF SSLMLNKNDN QIQRARPWPG FPTSKNLGTI GDANCMEQLL  60
VHCANAIESN DPTLAQQILW VLNNIAPPDG DSNQRLTCGF LRALIVRAAK IGTCKLLTAN  120
LNHSMETHKF SIIELAGFVD LTPWHRFGFT AANGAILEAV EGYSIVHIVD FSLTHCMQIP  180
TLIDAISTRL EGPPLVKLTV AGATEDLPPM LDLSYEELGA KLVNFARSRN VMMEFRVIPS  240
SSSDGFSNVI EQLRVQNLIR PENGEALVIN CHMMLHYISE ETTVRSPRFP LDQSSNSSVS  300
SFRSMFLKAI RNLDPTIVVL VDEDADFTSN NLVCRLRSAF NYLWIPYDTV DTFLPKGSKQ  360
RQWYEADICW KIENVIAHEG VQRLERLEPK SQWVQRMRNA NFRSSGFSED SVSEVKSMLD  420
EHAAGWGLKR DEEDVVLTWK GHNVVFATAW VPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B7e-483945222420Protein SHORT-ROOT
5b3h_E7e-483945222420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760243.10.0PREDICTED: scarecrow-like protein 32
RefseqXP_016506310.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-179SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1S4CYR70.0A0A1S4CYR7_TOBAC; scarecrow-like protein 32
TrEMBLA0A1U7V1H60.0A0A1U7V1H6_NICSY; scarecrow-like protein 32
STRINGXP_009760243.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-179GRAS family protein