PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016506309.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 464aa MW: 51292 Da PI: 6.7072 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.2 | 1.4e-08 | 344 | 391 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_016506309.1 344 SHSLAERVRREKISQRMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 391 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-15 | 338 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.53E-10 | 338 | 395 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.4E-15 | 340 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.256 | 340 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.3E-6 | 344 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-9 | 346 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MDKDYFSNGG IPPLLQFEPR IPLNSISGQS SDCFLNTHLD NKSIDQYTNF DSALSSMVSS 60 PVASNSVNSN DNFALRELIG KLGTICSSPP PQFTDYAVNY DHINNINNSD STMTSCYSTP 120 LNSPPKLRNN IPNFDISVPV NPPQFPTVSA NPEFSHKAAK FSCFGSSSFN GRTSQFGLNN 180 TELSHRSRNE PMGSGKLSRI SSSPSLVLQN KNSGQTQVEM MCENLDLGKF SGPNNANSNE 240 ECSVSEQIPS GEIGSKTPKE LNSRKRKAVS KGKGKKYNEA EAEDGTKEKR SKSTEGNGKK 300 NGTVKMEETN GSEGDEAEKE AKEEQKPAKD WIHVRARRGQ ATDSHSLAER VRREKISQRM 360 KFLQDLVPGC NKVTGKALML DEIINYVQSL QRQVEICQSN GSLQQHMFPL DRSCENLNQL 420 HTICEDELQT IVQMGFSQNS YQDLTLQSQA FPVPNSTSNM KLDM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016506309.1 | 0.0 | PREDICTED: transcription factor bHLH78-like isoform X2 | ||||
TrEMBL | A0A1S4CZ79 | 0.0 | A0A1S4CZ79_TOBAC; transcription factor bHLH78-like isoform X2 | ||||
STRING | XP_009596972.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 5e-52 | bHLH family protein |