PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016506302.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Nin-like | ||||||||
Protein Properties | Length: 903aa MW: 101132 Da PI: 5.8343 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 93.3 | 1.7e-29 | 582 | 633 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+le l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ XP_016506302.1 582 AEKTITLEILQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 633 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.575 | 570 | 653 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 9.5E-26 | 585 | 633 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 7.85E-23 | 798 | 886 | No hit | No description |
PROSITE profile | PS51745 | 25.328 | 802 | 886 | IPR000270 | PB1 domain |
SMART | SM00666 | 8.7E-24 | 802 | 885 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.7E-21 | 803 | 881 | No hit | No description |
CDD | cd06407 | 1.36E-39 | 804 | 885 | No hit | No description |
Pfam | PF00564 | 1.3E-18 | 804 | 883 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 903 aa Download sequence Send to blast |
MDETVIPSNP LLTNQSDYFM DLDYVDGLLL EGCWLETTDG NEFLQNSPAN FNAPFDSSFM 60 WPNTIDTNNV EFNGIPSKDF QEEKQIQPFG ENVNNAMCTS GQSESHFVEA PELNRRWWFG 120 PKASSSVMDR LIWALGHIRD CSRDKDILLQ LWVPINRDGR HVLSTTDQPF LLDLNCPRLA 180 NYRQVSVNYQ FPANEDSKEI VGLPGRVFAD KVPEWSPDVR FFRSEEYPRV EHAQQYDVRG 240 TLAVPVFEQG SRNCLGVIEV VMTTQKIKYR PELESVCEAL KAVNLRTSEV STTQNAKVCD 300 LSYQAALPEI LEVLNSACET HGLPLAQTWV PCVQQGKGGC RHSEENLIHC VSTEDSACYV 360 ADPHVRGFHE ACSEHHLLKG QGVVGRAFMT NQPCFSADLT SYSKTEYPLS HHAQMFGLQA 420 AVAIRLRSIS TGSCDFVLEF FLPSDCRNPE EHRKMLTSLS IIIQNVCRTL RVVTDKELQE 480 EAVSIGEAAN PSFIRSNKEQ TETSQERTSW TSCDAEFQES STVVSAFHDE KPDEMLRKEP 540 VEFRHHNDSD YGMDFALNEN HCASGEGVSR NGKKGDRRRT KAEKTITLEI LQQYFAGSLK 600 DAAKSIGVCP TTLKRICRQH GIKRWPSRKI KKVGHSLQKI QRVIDSVQGA SGSLQIESFY 660 SNFPELASPN VSRLSPFANS KSNEHPKALN AQQEGCVMSP HAAASKSPSS SCSRSSSSSQ 720 CCSSGTKPQS SPLSIAGNDD PIVQEESVDN AVKRVKSEPE LHLSSETLKI LPRSQSHACV 780 AENPKSESLL VKKGPLRSQE EAPRVKVTHG EEKIRFRMQN SWRYSELLRE ITRRFGIDDP 840 SGLQLKYMDD DSEWVLLTCD ADLEECLDVC MSSQNQMIKL ILVRDSQHHI GSSFGSSSPI 900 LVQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016506302.1 | 0.0 | PREDICTED: protein NLP4-like | ||||
Swissprot | Q9LE38 | 0.0 | NLP4_ARATH; Protein NLP4 | ||||
TrEMBL | A0A1S4CYT4 | 0.0 | A0A1S4CYT4_TOBAC; protein NLP4-like | ||||
STRING | XP_009759077.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1598 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 0.0 | Nin-like family protein |