PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016506203.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 322aa MW: 35646.6 Da PI: 6.6742 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.8e-18 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l XP_016506203.1 39 KGPWTSAEDAILVDYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 86 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a+ ++ gRt++++k++w++ XP_016506203.1 92 KGAFTPEEERRIIELHAKMGNK-WARMAADLP-GRTDNEIKNYWNT 135 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.592 | 34 | 86 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.83E-30 | 36 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-13 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 39 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.53E-11 | 41 | 86 | No hit | No description |
PROSITE profile | PS51294 | 26.003 | 87 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-16 | 91 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 92 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-26 | 94 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.23E-12 | 94 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MSMTSESDDR MTSNVGVDSP SVEEACGGGN TGGGLPLKKG PWTSAEDAIL VDYVTKHGEG 60 NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFTPEEE RRIIELHAKM GNKWARMAAD 120 LPGRTDNEIK NYWNTRIKRR QRAGLPVYPP DICFQAISEN KQNEELGAFS STDAQYPDFL 180 PMNNYEIPAV EFKNLEFNQQ LCPPPLLDIP SGSLLDIPAR SLLAQGLNSA YYSRSFFSTV 240 HPTKRMRGSE SEFSGLNDDS SPLKNDDSFP SYHQYQNDGF LLAQSLGFSS SYYRNLTSDH 300 HPTSLGVIPG SHAHLNGNSS SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-31 | 34 | 140 | 1 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF175475 | 0.0 | EF175475.1 Solanum lycopersicum GAMYB-like2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009596031.1 | 0.0 | PREDICTED: transcription factor GAMYB-like isoform X1 | ||||
Refseq | XP_016506203.1 | 0.0 | PREDICTED: transcription factor GAMYB-like, partial | ||||
Swissprot | A2WW87 | 1e-90 | GAM1_ORYSI; Transcription factor GAMYB | ||||
TrEMBL | A0A1S4CYH9 | 0.0 | A0A1S4CYH9_TOBAC; transcription factor GAMYB-like | ||||
STRING | XP_009596031.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2021 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 3e-72 | myb domain protein 33 |