PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016506175.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 284aa MW: 32175.1 Da PI: 6.5047 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.6e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl XP_016506175.1 16 KGPWSCEEDLRLISFIQKHGHPNWRSLPKQAGLLRCGKSCRLRWINYL 63 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.8e-16 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+ +v++++ lG++ W++Ia++++ gRt++++k+ w++ XP_016506175.1 69 RGNFTPEEEYTIVKLHHSLGNK-WSKIASHLP-GRTDNEIKNIWNT 112 89********************.*********.*********9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 8 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.941 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-29 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-11 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-8 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 23.09 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-26 | 67 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-15 | 69 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-9 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MRKGRAACCD KGKVKKGPWS CEEDLRLISF IQKHGHPNWR SLPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFTPEEEYTI VKLHHSLGNK WSKIASHLPG RTDNEIKNIW NTRLKKRFKN 120 AELDGCANSF SPPSSSTSVV SHTANEGEFK NVNDDNMITE KEASKSCSPT SSYASNLSNL 180 SQVEISGPNV DMDWIFQLNE EPNLEYFPCI TAGKVHDNEG MIEIPLEGSG IDFWDMLDIM 240 SPSPNSESKL DNHSEGSDQP VCQGISEFEC QNWMRYFENE LGLK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-26 | 16 | 118 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016506175.1 | 0.0 | PREDICTED: myb-related protein 340-like | ||||
TrEMBL | A0A1S4CYD3 | 0.0 | A0A1S4CYD3_TOBAC; myb-related protein 340-like | ||||
STRING | XP_009612238.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 5e-75 | myb domain protein 63 |