PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016506107.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRF | ||||||||
Protein Properties | Length: 479aa MW: 52983.7 Da PI: 5.9639 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72.6 | 4.5e-23 | 202 | 244 | 2 | 44 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrC+RtDGKkWRCsr+v + +k+CErH+hrgr rsrk++e XP_016506107.1 202 LEPGRCKRTDGKKWRCSRDVAPHQKYCERHMHRGRPRSRKHVE 244 69***************************************98 PP | |||||||
2 | QLQ | 51.9 | 2.2e-18 | 138 | 172 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT++Q+ +L++Q+++yKy+++ PvPp+Ll+ i+ XP_016506107.1 138 PFTWSQWKELERQAMIYKYMVSAIPVPPDLLLSIC 172 8*******************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.6E-10 | 137 | 173 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.7E-13 | 138 | 172 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.147 | 138 | 173 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.213 | 201 | 245 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.4E-19 | 203 | 244 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MGMEDGAING FNVSNKANLD VGKISTTTAI CYNFQLQTTE SFPSKIMMGH NQDPHRSFSD 60 EDDDGGGGDS GPTLNHSGAN KMPSSNEHNV YSDASFLLPP PSPLPATGAA AVVRTFQPFD 120 ISTNSSPVEG MAAALGFPFT WSQWKELERQ AMIYKYMVSA IPVPPDLLLS ICTNSSGASH 180 TTTSASGSGS VQGQRCRNIR DLEPGRCKRT DGKKWRCSRD VAPHQKYCER HMHRGRPRSR 240 KHVEVHATLS NNNDNKKTRN HPVPLESTPI AVPKPPPTGQ TDSRSTQPLR SAFQYMEGPL 300 FLHDKMGQNI STDSSFNELH RSSGWTMEGE LVAKAGVGQQ WQHLMESNIH PADWQDSYRE 360 EALNLLACRD LERTEDVSMR HNGEFNFMIN PELLSLDKQS VKEAPRDLIN AWSNDNIYNN 420 SNDDNMEEAS LWPSQGNISP SSLTLSMAMA AGNALDEDMG LESSVMNNAY QNKSWEKFS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 4e-65 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016506107.1 | 0.0 | PREDICTED: uncharacterized protein LOC107823908 isoform X2 | ||||
TrEMBL | A0A1S4CY90 | 0.0 | A0A1S4CY90_TOBAC; uncharacterized protein LOC107823908 isoform X2 | ||||
STRING | XP_009597554.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 1e-36 | growth-regulating factor 7 |