PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016505823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 21722.2 Da PI: 7.3672 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.4 | 1.2e-43 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC ++C++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+ XP_016505823.1 11 PCAACKFLRRKCLPGCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELD 105 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_016505823.1 106 ATNA 109 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.305 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.8E-43 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MASSSSYSNP PCAACKFLRR KCLPGCIFAP YFPPEEPTKF ANVHKIFGAS NVSKLLNEIQ 60 PHQREDAVNS LAYEAEARMK DPVYGCVGAI SVLQRQVIRL QKELDATNAD LMRYTNREVN 120 NSHAYNNPSG GAMNNQMVNQ QRSNLNYGRR MGPVDGTATG FDQTYGFCIP NYSPNTWNSN 180 TISGNHNPEA DDDSSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-66 | 2 | 121 | 2 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-66 | 2 | 121 | 2 | 121 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009597524.1 | 1e-147 | PREDICTED: LOB domain-containing protein 25-like isoform X1 | ||||
Refseq | XP_016505823.1 | 1e-147 | PREDICTED: LOB domain-containing protein 25-like | ||||
Refseq | XP_018625398.1 | 1e-147 | PREDICTED: LOB domain-containing protein 25-like isoform X1 | ||||
Refseq | XP_018625399.1 | 1e-147 | PREDICTED: LOB domain-containing protein 25-like isoform X1 | ||||
Swissprot | Q8L8Q3 | 2e-67 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
Swissprot | Q9FML4 | 3e-67 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A1S4CXF4 | 1e-146 | A0A1S4CXF4_TOBAC; LOB domain-containing protein 25-like | ||||
STRING | XP_009597524.1 | 1e-146 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 7e-70 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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