PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016505504.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 252aa MW: 28010.9 Da PI: 5.3741 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.9 | 1e-38 | 47 | 108 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC+stntkfCyynnyslsqPryfCk+C+ryWt+GG+lr +PvGgg+rk+kksss XP_016505504.1 47 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCKRYWTEGGSLRSIPVGGGSRKSKKSSS 108 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-27 | 34 | 99 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-33 | 48 | 105 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.509 | 51 | 105 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 53 | 89 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MDTAQWPQEI VVKPMEEIIP KSTNTITTIC SSKPSTHVER KIRPHQKDQA LNCPRCNSTN 60 TKFCYYNNYS LSQPRYFCKT CKRYWTEGGS LRSIPVGGGS RKSKKSSSTN SSSSNTVLRE 120 LSKTVAESVL DPPNNEGSQD LNLGFSFDFK TISELIQVPN NSFMPMPISD PNSVYSSLNF 180 SLDHGLGISG DYENNLQDVQ ESTTSGRLLF PFEDLKQVSN TSIDGAEENR DQPTGESTGY 240 WNAFLGENGG SW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB971709 | 0.0 | AB971709.1 Nicotiana tabacum NtBBF2 mRNA for Dof zinc finger protein, complete cds, cultivar: Samsun NN. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009625121.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.8-like | ||||
Refseq | XP_016505504.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.8-like | ||||
TrEMBL | A0A1S4CWW0 | 0.0 | A0A1S4CWW0_TOBAC; dof zinc finger protein DOF1.8-like | ||||
STRING | XP_009625121.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.1 | 1e-47 | Dof family protein |