PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016505504.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 252aa    MW: 28010.9 Da    PI: 5.3741
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016505504.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.91e-3847108263
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                     k++al+cprC+stntkfCyynnyslsqPryfCk+C+ryWt+GG+lr +PvGgg+rk+kksss
  XP_016505504.1  47 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCKRYWTEGGSLRSIPVGGGSRKSKKSSS 108
                     7899******************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-273499IPR003851Zinc finger, Dof-type
PfamPF027011.2E-3348105IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.50951105IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105389IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDTAQWPQEI VVKPMEEIIP KSTNTITTIC SSKPSTHVER KIRPHQKDQA LNCPRCNSTN  60
TKFCYYNNYS LSQPRYFCKT CKRYWTEGGS LRSIPVGGGS RKSKKSSSTN SSSSNTVLRE  120
LSKTVAESVL DPPNNEGSQD LNLGFSFDFK TISELIQVPN NSFMPMPISD PNSVYSSLNF  180
SLDHGLGISG DYENNLQDVQ ESTTSGRLLF PFEDLKQVSN TSIDGAEENR DQPTGESTGY  240
WNAFLGENGG SW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9717090.0AB971709.1 Nicotiana tabacum NtBBF2 mRNA for Dof zinc finger protein, complete cds, cultivar: Samsun NN.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625121.10.0PREDICTED: dof zinc finger protein DOF1.8-like
RefseqXP_016505504.10.0PREDICTED: dof zinc finger protein DOF1.8-like
TrEMBLA0A1S4CWW00.0A0A1S4CWW0_TOBAC; dof zinc finger protein DOF1.8-like
STRINGXP_009625121.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.11e-47Dof family protein