PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016505291.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 499aa MW: 54722 Da PI: 5.8406

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016505291.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2e-39	147	206	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_016505291.1 147 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNS 206 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	136	204	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-32	149	205	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	151	205	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	153	189	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MRELKDPEIK LFGKKIALPE NIKMWPLTVS GEGNSGNASC GVKDSETNIG SDCDGCLEDE 60 KVSSEEKDEE NQEAEKDHIS GELSETKSEE KDQNQMMEES EDPRLLSESD NNPKTPNIDE 120 DSPALKTSKT ENDPNDAYSQ QKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKS 180 CQRYWTAGGT MRNVPVGAGR RKNKNSATHC HHITIPEVLQ AARIDPPNGF HHPTFKPNGT 240 VLSFGPDSPL CESMASVLNL TEKKVANGIH NGFYGPENKN SFRKAGENGD DCCSGSSVTT 300 STSMIDGGTH RRNELAVPNV NGFAPPVPCI PGVPWPYPWN AAVPLPAIFP PGYPLPFCPP 360 PYWNCNMLGP WSIPWLTPPS PTENPKGSGS APNSPLGKHS REGDLLKSNS PDEKEPSEEK 420 NSERSVLVPK TLRIDDPDEA AKSSIWSTLG IKYDSASRGG LFKALQPKSD KKDHTATTSP 480 MLQANPAALS RSLSFQERA

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MRELKDPEIK LFGKKIALPE NIKMWPLTVS GEGNSGNASC GVKDSETNIG SDCDGCLEDE  60
KVSSEEKDEE NQEAEKDHIS GELSETKSEE KDQNQMMEES EDPRLLSESD NNPKTPNIDE  120
DSPALKTSKT ENDPNDAYSQ QKTLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKS  180
CQRYWTAGGT MRNVPVGAGR RKNKNSATHC HHITIPEVLQ AARIDPPNGF HHPTFKPNGT  240
VLSFGPDSPL CESMASVLNL TEKKVANGIH NGFYGPENKN SFRKAGENGD DCCSGSSVTT  300
STSMIDGGTH RRNELAVPNV NGFAPPVPCI PGVPWPYPWN AAVPLPAIFP PGYPLPFCPP  360
PYWNCNMLGP WSIPWLTPPS PTENPKGSGS APNSPLGKHS REGDLLKSNS PDEKEPSEEK  420
NSERSVLVPK TLRIDDPDEA AKSSIWSTLG IKYDSASRGG LFKALQPKSD KKDHTATTSP  480
MLQANPAALS RSLSFQERA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016505291.1	0.0	PREDICTED: cyclic dof factor 3-like
TrEMBL	A0A1S4CVZ9	0.0	A0A1S4CVZ9_TOBAC; cyclic dof factor 3-like
STRING	XP_009587736.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-82	cycling DOF factor 3