PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016505250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 409aa MW: 46881.3 Da PI: 8.7203 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.5 | 1.3e-06 | 57 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+ sF r nL+ H r+H XP_016505250.1 57 YVCEICNLSFQREQNLQMHRRRH 79 9*********************9 PP | |||||||
2 | zf-C2H2 | 16.7 | 2e-05 | 139 | 161 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k Hi+t+ XP_016505250.1 139 WVCQKCSKGYAVQSDYKAHIKTC 161 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 4.6E-6 | 56 | 80 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.52E-6 | 56 | 79 | No hit | No description |
SMART | SM00355 | 9.9E-4 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.9E-5 | 57 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.699 | 57 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 87 | 103 | 133 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.1E-4 | 130 | 160 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.52E-6 | 134 | 159 | No hit | No description |
SMART | SM00355 | 63 | 139 | 166 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MLASHSFLFP APSQSEPFSS PENGFIIKRK RRPAGTPDPD AQVVYLTAEM LMESDRYVCE 60 ICNLSFQREQ NLQMHRRRHK VPWKLKKKEE EKNEMEQVKK RVYVCPEPSC VHHNPSHALG 120 DLVGIKKHFR RKHSNYKQWV CQKCSKGYAV QSDYKAHIKT CGTRGHSCDC GRVFSRVETF 180 IEHQDSCKAQ STTSTTTKEC DVQKPKPAFL QPQCFSNYSN SRMPKNTTDH PNLELELFTS 240 SNYNQNTYYS SFLQNEHTPQ LDLSFGSQSD NYYQVQHNEK AAALIMEDTA IQVSKLKSEA 300 KEILKIAMEE KAMAAEKRQE AKCLIELANL EMAKAREIRQ QSLLAEYSTA QLLKDCAEMK 360 IVGSQSHVKI ITCTSCNSKQ FQTVSKEAAV CREVFPALTN YLSSSIYRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-17 | 137 | 189 | 5 | 57 | Zinc finger protein JACKDAW |
5b3h_F | 3e-17 | 137 | 189 | 5 | 57 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 4e-80 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 4e-80 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009616334.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1 | ||||
Refseq | XP_016505250.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1 | ||||
Swissprot | F4IPE3 | 1e-108 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A1S4CVU6 | 0.0 | A0A1S4CVU6_TOBAC; protein SHOOT GRAVITROPISM 5-like isoform X1 | ||||
STRING | XP_009616334.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1022 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 2e-93 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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