PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016504990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 424aa MW: 47296.7 Da PI: 5.6981 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.3 | 5.8e-08 | 338 | 378 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L XP_016504990.1 338 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 378 69******************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.332 | 329 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-14 | 334 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-13 | 335 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-12 | 337 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-5 | 338 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.91E-4 | 351 | 383 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MESLNWDESP VFQEFGASFD PIHVISNWNM PQRQEAAVRL AADSMAAKSA ADLSRDCAEN 60 GFSSSPILNM PNYISDSNPM ALNGLMADFS SNGQVQEIKP APKLLSNACS LESLDCLLSA 120 TTTTNNTDTS IEDDGMSMIF VDNSKGLWNF NSSSEHNASS EALKQSLGYQ QLLTCHESGH 180 KILQEEERKR KPYKPINANE LDETVSQSSP NHKYNKRSHN QTLENSPSEF NLFESDSLNG 240 DCGNFQLISE KQSKSKKPRL IAENYNKSRP ISSNINFQQA SSSVSSIDQE PDPEAIAQMK 300 EMIYRAAAFR PVNFGPEAPE KPKRKNVRIS TDPQTVAARQ RRERISERIR VLQRLVPGGS 360 KMDTASMLDE AANYLKFLRS QVEALEAIGQ KQDPFSSIQF NYPFPMQLPH FPVQNPNPIH 420 GPKS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 338 | 343 | RQRRER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009777337.1 | 0.0 | PREDICTED: transcription factor bHLH87-like | ||||
Refseq | XP_009777338.1 | 0.0 | PREDICTED: transcription factor bHLH87-like | ||||
Refseq | XP_009777339.1 | 0.0 | PREDICTED: transcription factor bHLH87-like | ||||
Refseq | XP_016504990.1 | 0.0 | PREDICTED: transcription factor bHLH87-like | ||||
TrEMBL | A0A1S4CV37 | 0.0 | A0A1S4CV37_TOBAC; transcription factor bHLH87-like | ||||
TrEMBL | A0A1U7WRM8 | 0.0 | A0A1U7WRM8_NICSY; transcription factor bHLH87-like | ||||
STRING | XP_009777337.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4350 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 1e-61 | bHLH family protein |