PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016504881.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 264aa    MW: 29877.3 Da    PI: 4.7948
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016504881.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.81.4e-2333126185
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                     rWt+qe+l+Lie+++  eer  rg+         + +p+W +vs+++r++g +r+p+qC+++w+n+  +++kik++e++ +  s s + + ++l
  XP_016504881.1  33 RWTRQETLVLIEGKKIAEERTHRGRksssvfgsdKPEPKWNSVSSYCRQHGANRGPVQCRKRWSNMISDFRKIKAWESQANGSSDSYWIMSNDL 126
                     8**************999999887555677777799*******************************************977777778777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.3292699IPR017877Myb-like domain
SuperFamilySSF466897.8E-531101IPR009057Homeodomain-like
PfamPF138375.1E-1332121No hitNo description
Gene3DG3DSA:1.10.10.601.5E-632100IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MIENTTSLAD LVDGQQKPTE GTDDISKTPR HSRWTRQETL VLIEGKKIAE ERTHRGRKSS  60
SVFGSDKPEP KWNSVSSYCR QHGANRGPVQ CRKRWSNMIS DFRKIKAWES QANGSSDSYW  120
IMSNDLRREK KLPGFFDREV YDVMDGKEFT AEAYQLALVT ITTDDKVDYG IETAEEEEEK  180
EEEENEQENT EAEAVSHTDG YIMADDVLFP AMEDIGSNPL KEGIAKDKKA KSIPSPTPIS  240
GKLKCPSKCF ALNQNLLLFT SEPI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016504881.10.0PREDICTED: trihelix transcription factor ASR3-like
TrEMBLA0A1S4CUT00.0A0A1S4CUT0_TOBAC; trihelix transcription factor ASR3-like
STRINGXP_009587770.11e-179(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.18e-61Trihelix family protein