PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016504837.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 204aa    MW: 23233.4 Da    PI: 5.1761
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016504837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.6e-2095144255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  XP_016504837.1  95 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAAIAYDEAALRFKG 144
                     8********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.59E-2194153No hitNo description
PROSITE profilePS5103225.01495152IPR001471AP2/ERF domain
SMARTSM003802.3E-3795158IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-2295153IPR016177DNA-binding domain
PfamPF008473.4E-1395144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3295153IPR001471AP2/ERF domain
PRINTSPR003671.6E-1196107IPR001471AP2/ERF domain
PRINTSPR003671.6E-11118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MERGDFSSNE MEMEEKENND NIDDPQLQEE LYNIYSARSQ HDMSAMVSVL SQVIGNSTTH  60
SSSANATPLT LPQSAVALQN QSQSIEDQGN SRRKRYRGVR QRPWGKWAAE IRDPKKAARV  120
WLGTFETAEA AAIAYDEAAL RFKGNKAKLN FPERVQASYE QRQLQSSYKQ EEEVLMRFSS  180
HFGTTSSSSG PHESNWEEFE DRKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2694158469ATERF1
3gcc_A1e-2694158469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016504837.11e-151PREDICTED: ethylene-responsive transcription factor ERF114-like isoform X2
SwissprotQ9FH545e-52EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1S4CUC71e-149A0A1S4CUC7_TOBAC; ethylene-responsive transcription factor ERF114-like isoform X2
STRINGXP_009780575.14e-94(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]