PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016504794.1

Common Name

FL1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LFY

Protein Properties

Length: 413aa MW: 46253.1 Da PI: 7.0522

Description

LFY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016504794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FLO_LFY	647.6	1.8e-197	1	395	1	386
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseap.........leaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeel 86 mdpeafsaslfkwdpr a+ +pp+rlle a+++++p l+aa ++ +r+l +leelf+ayG+ry+t+akiaelGftv+tL+dmkdeel XP_016504794.1 1 MDPEAFSASLFKWDPRGAM-PPPTRLLEAAVAPPPPppvlpppqpLSAAYSIRTRELGGLEELFQAYGIRYYTAAKIAELGFTVNTLLDMKDEEL 94 9************9877.77788888887777666777554434444444555566********************************* PP FLO_LFY 87 ddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqe.ekeaagsggeglgeaelvaaee.. 178 dd+m+sls+ifr++llvGeryGikaa+raerrrleeee ++r +lls+ ++aldalsqeglseepvq+ e+ea+gsgg+g +++e+vaa XP_016504794.1 95 DDMMNSLSQIFRWELLVGERYGIKAAIRAERRRLEEEE-LRRRGHLLSDGGTNALDALSQEGLSEEPVQQqEREAVGSGGGG-TTWEVVAAVGgg 187 ********************************88.8888899999999************99456677777776.888888776543 PP FLO_LFY 179 kkseeekkkaskk.kqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiake 272 + +++++kk ++ +++r + +++++e+++e +e++ + +++g + +erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iake XP_016504794.1 188 RMKQRRRKKVVSTgRERRGR-ASAEEDEETEEGQEDEWNINDAGGGISERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKE 281 44444444444442333333.333444555555555566667777778******************************************* PP FLO_LFY 273 rGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsi 367 rGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdid++fnahprL+i XP_016504794.1 282 RGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDTIFNAHPRLAI 376 ******************************************************************************************* PP FLO_LFY 368 WYvPtkLrqLChlerskas 386 WYvPt+LrqLCh ers+a+ XP_016504794.1 377 WYVPTRLRQLCHSERSNAA 395 **************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01698	7.9E-211	1	395	IPR002910	Floricaula/leafy protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007275	Biological Process	multicellular organism development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MDPEAFSASL FKWDPRGAMP PPTRLLEAAV APPPPPPVLP PPQPLSAAYS IRTRELGGLE 60 ELFQAYGIRY YTAAKIAELG FTVNTLLDMK DEELDDMMNS LSQIFRWELL VGERYGIKAA 120 IRAERRRLEE EELRRRGHLL SDGGTNALDA LSQEGLSEEP VQQQEREAVG SGGGGTTWEV 180 VAAVGGGRMK QRRRKKVVST GRERRGRASA EEDEETEEGQ EDEWNINDAG GGISERQREH 240 PFIVTEPGEV ARGKKNGLDY LFHLYEQCRD FLIQVQNIAK ERGEKCPTKV TNQVFRYAKK 300 AGASYINKPK MRHYVHCYAL HCLDEEASNA LRRAFKERGE NVGAWRQACY KPLVAIAARQ 360 GWDIDTIFNA HPRLAIWYVP TRLRQLCHSE RSNAAAAASS SVSGGVGDHL PHF

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MDPEAFSASL FKWDPRGAMP PPTRLLEAAV APPPPPPVLP PPQPLSAAYS IRTRELGGLE  60
ELFQAYGIRY YTAAKIAELG FTVNTLLDMK DEELDDMMNS LSQIFRWELL VGERYGIKAA  120
IRAERRRLEE EELRRRGHLL SDGGTNALDA LSQEGLSEEP VQQQEREAVG SGGGGTTWEV  180
VAAVGGGRMK QRRRKKVVST GRERRGRASA EEDEETEEGQ EDEWNINDAG GGISERQREH  240
PFIVTEPGEV ARGKKNGLDY LFHLYEQCRD FLIQVQNIAK ERGEKCPTKV TNQVFRYAKK  300
AGASYINKPK MRHYVHCYAL HCLDEEASNA LRRAFKERGE NVGAWRQACY KPLVAIAARQ  360
GWDIDTIFNA HPRLAIWYVP TRLRQLCHSE RSNAAAAASS SVSGGVGDHL PHF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2vy1_A	1e-109	234	404	3	173	PROTEIN LEAFY
2vy2_A	1e-109	234	404	3	173	PROTEIN LEAFY
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that act to specify determinacy in the progenitor cells for both flowers and leaves.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ686928	0.0	JQ686928.1 Nicotiana tabacum cultivar SR1 LEAFY/FLORICAULA (LFY) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009614004.1	0.0	PREDICTED: floricaula/leafy homolog 1 isoform X2
Swissprot	Q40504	0.0	FL1_TOBAC; Floricaula/leafy homolog 1
TrEMBL	A0A1S4CUW9	0.0	A0A1S4CUW9_TOBAC; floricaula/leafy homolog 1
STRING	XP_009614003.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6668	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61850.1	1e-147	floral meristem identity control protein LEAFY (LFY)

Publications ? help Back to Top
Kelly AJ,Bonnlander MB,Meeks-Wagner DR NFL, the tobacco homolog of FLORICAULA and LEAFY, is transcriptionally expressed in both vegetative and floral meristems. Plant Cell, 1995. 7(2): p. 225-34 [PMID:7756832]