PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016504691.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 520aa MW: 58843.9 Da PI: 8.1421 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.1 | 2.8e-17 | 27 | 118 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 ffkv+ d + +++l++p fa++ ++ ++++ led+sg++W+v++ +++ g+ +++GW +F +++gL+ gDf+vF+++ + + f v XP_016504691.1 27 FFKVM--IDKSFHKILYFPPMFAQSVSHL--TDRETYLEDSSGQRWRVTI--CNHEGSLAIRQGWPKFSSEHGLNLGDFLVFYYVVEvQYF--IV 113 89999..88999999********999755..5668***************..*******************************99754555..99 PP EEE-S CS B3 95 kvfrk 99 ++++k XP_016504691.1 114 QIYDK 118 98887 PP | |||||||
2 | B3 | 31.4 | 3.3e-10 | 438 | 513 | 14 | 92 |
T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 + l lp + +++ ++ k e + l+ ++ + W + + ++ g vlt+GWk F+ a gL+ gD ++F+l++ + e+ XP_016504691.1 438 DFLELPESW-RKYlmKKAKLERWIIFLRGPDKKIWPIIY--HRRAGVDVLTNGWKTFAAAYGLNRGDDCLFELEN--QLEC 513 556666665.3665544455667799999**********..9999999************************865..4444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-19 | 24 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-17 | 24 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.929 | 25 | 119 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.80E-17 | 26 | 117 | No hit | No description |
SMART | SM01019 | 3.7E-10 | 27 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-15 | 27 | 118 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.32 | 425 | 520 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0097 | 430 | 518 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.06E-10 | 434 | 509 | No hit | No description |
Pfam | PF02362 | 2.5E-7 | 437 | 512 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.75E-12 | 438 | 513 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-11 | 438 | 511 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
MACEKEASDV YCKQNGLLFH GKRVSSFFKV MIDKSFHKIL YFPPMFAQSV SHLTDRETYL 60 EDSSGQRWRV TICNHEGSLA IRQGWPKFSS EHGLNLGDFL VFYYVVEVQY FIVQIYDKSG 120 CQKIKFYSDS GKGKRKTRTY PEATSQVKLL QTTDINPANK RSKISAVSES KKVPCKTHIK 180 KFATNIDADT GKGQLVYPAV YVDESFCMID RDAQYHQGDD RLCLHLSSFE MPASKPLAEG 240 TSSLLKADGG NSIHVETNLR SQTEPNLVVV ADYLNSEELL PKFEAEITGT DMVPAKDIPL 300 LSQKDQNDCP SGIISSSFLK PAANINKNDG VSNVTKYQNH WMKSMMLQSD NKDGRCTGSN 360 QITREKSNEA SWFARETRLV KKEYEETAAE AYYPARAISG KEPANGEKVI KSEPADSGDM 420 PSLKAVSYSC LLEVDGRDFL ELPESWRKYL MKKAKLERWI IFLRGPDKKI WPIIYHRRAG 480 VDVLTNGWKT FAAAYGLNRG DDCLFELENQ LECIFAVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016504691.1 | 0.0 | PREDICTED: uncharacterized protein LOC107822650 isoform X2 | ||||
TrEMBL | A0A1S4CU95 | 0.0 | A0A1S4CU95_TOBAC; uncharacterized protein LOC107822650 isoform X2 | ||||
STRING | XP_009775871.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 8e-10 | B3 family protein |