PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016504551.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 269aa MW: 29522.1 Da PI: 9.3765

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016504551.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	98.5	4.4e-31	79	132	6	59
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 l+cprC+stntkfCy+nnyslsqPryfC +C+r+WtkGG lr vP Gg rr++ XP_016504551.1 79 LRCPRCESTNTKFCYFNNYSLSQPRYFCMTCKRHWTKGGGLRSVPEGGRRRRRI 132 78*********************************************9999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-23	59	123	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-29	78	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.583	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MVFSSNPAYL IPATNWQQND GSSSSNLQFL SAPSEPAPPP LPPPPLPSQP YAGAAGSTRP 60 RSMHEQARLA NIRMPLAVLR CPRCESTNTK FCYFNNYSLS QPRYFCMTCK RHWTKGGGLR 120 SVPEGGRRRR RIKLSNSNKN NNNNTSMSPA SSPKNDGLKA TTNNLGACNS NRFFGHVNSQ 180 TPPLRFMTPL GQLTEHYHYH YSTPSDNNSS LNYSAISSAA PVVDASIDSI QLEMEAQQFP 240 NLMGILDLSM PSGLYPSGEE IHSTGINII

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	133	GRRRRRIKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016504551.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A1S4CTV9	0.0	A0A1S4CTV9_TOBAC; dof zinc finger protein DOF2.4-like
STRING	XP_009793182.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18241	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	5e-30	Dof family protein